(19 nodes) Renal system process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQP3_BRAFL	Uncharacterized protein. (922 aa)
	C3XX83_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (304 aa)
	C3XXJ8_BRAFL	AMP_N domain-containing protein. (419 aa)
	C3YEW7_BRAFL	Uncharacterized protein. (460 aa)
	C3YGR2_BRAFL	Uncharacterized protein. (416 aa)
	C3YKX9_BRAFL	Uncharacterized protein. (564 aa)
	C3YNA7_BRAFL	Battenin. (404 aa)
	C3YUU7_BRAFL	KCNQ_channel domain-containing protein. (66 aa)
	C3YUU8_BRAFL	Ion_trans_2 domain-containing protein. (111 aa)
	C3YUU9_BRAFL	Ion_trans domain-containing protein; Belongs to the potassium channel family. (157 aa)
	C3Z1J9_BRAFL	Uncharacterized protein. (559 aa)
	C3Z624_BRAFL	ABC2_membrane domain-containing protein. (390 aa)
	C4A0I4_BRAFL	Battenin. (336 aa)
	C3Z627_BRAFL	ABC transporter domain-containing protein. (629 aa)
	C3Z934_BRAFL	Uncharacterized protein. (123 aa)
	C3Z936_BRAFL	Uncharacterized protein. (365 aa)
	Arx1	ABC transporter domain-containing protein. (110 aa)
	C3ZGC1_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (400 aa)
	C3ZN03_BRAFL	Uncharacterized protein. (538 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XX83_BRAFL	C3XXJ8_BRAFL	C3XX83	C3XXJ8	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	AMP_N domain-containing protein.	0.480
C3XX83_BRAFL	C3ZGC1_BRAFL	C3XX83	C3ZGC1	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.469
C3XXJ8_BRAFL	C3XX83_BRAFL	C3XXJ8	C3XX83	AMP_N domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.480
C3YGR2_BRAFL	C3Z936_BRAFL	C3YGR2	C3Z936	Uncharacterized protein.	Uncharacterized protein.	0.905
C3YUU8_BRAFL	C3YUU9_BRAFL	C3YUU8	C3YUU9	Ion_trans_2 domain-containing protein.	Ion_trans domain-containing protein; Belongs to the potassium channel family.	0.473
C3YUU9_BRAFL	C3YUU8_BRAFL	C3YUU9	C3YUU8	Ion_trans domain-containing protein; Belongs to the potassium channel family.	Ion_trans_2 domain-containing protein.	0.473
C3Z936_BRAFL	C3YGR2_BRAFL	C3Z936	C3YGR2	Uncharacterized protein.	Uncharacterized protein.	0.905
C3ZGC1_BRAFL	C3XX83_BRAFL	C3ZGC1	C3XX83	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.469