(23 nodes) DNA-directed 5-3 RNA polymerase activity network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YHN8_BRAFL	Uncharacterized protein. (831 aa)
	C3Y9I0_BRAFL	Uncharacterized protein. (203 aa)
	C3YD41_BRAFL	RPOL4c domain-containing protein. (139 aa)
	C3YEB3_BRAFL	Uncharacterized protein. (975 aa)
	C3Y5U9_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1104 aa)
	C3Y5M2_BRAFL	Uncharacterized protein. (390 aa)
	C3YEB7_BRAFL	RNA_pol_Rpb1_1 domain-containing protein. (384 aa)
	C3YEU3_BRAFL	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (372 aa)
	C4A0T2_BRAFL	Uncharacterized protein. (470 aa)
	C3ZZC8_BRAFL	Uncharacterized protein. (138 aa)
	C3ZQF0_BRAFL	Uncharacterized protein. (210 aa)
	C3ZES3_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1934 aa)
	C3ZBW5_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1731 aa)
	C3Z918_BRAFL	RPOLD domain-containing protein. (275 aa)
	C3Z3J6_BRAFL	RPOLD domain-containing protein. (290 aa)
	C3YYC3_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
	C3YY41_BRAFL	RNA_pol_L_2 domain-containing protein. (117 aa)
	C3YW52_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1140 aa)
	C3YRU6_BRAFL	RNA_pol_L_2 domain-containing protein. (110 aa)
	C3YHR6_BRAFL	Uncharacterized protein. (764 aa)
	C3YH75_BRAFL	Uncharacterized protein. (129 aa)
	C3Y2C4_BRAFL	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (804 aa)
	C3Y645_BRAFL	Uncharacterized protein. (68 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2C4_BRAFL	C3Y5U9_BRAFL	C3Y2C4	C3Y5U9	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.576
C3Y2C4_BRAFL	C3YW52_BRAFL	C3Y2C4	C3YW52	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.847
C3Y2C4_BRAFL	C3YYC3_BRAFL	C3Y2C4	C3YYC3	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.532
C3Y2C4_BRAFL	C3ZBW5_BRAFL	C3Y2C4	C3ZBW5	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.504
C3Y5M2_BRAFL	C3Y5U9_BRAFL	C3Y5M2	C3Y5U9	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.969
C3Y5M2_BRAFL	C3Y645_BRAFL	C3Y5M2	C3Y645	Uncharacterized protein.	Uncharacterized protein.	0.998
C3Y5M2_BRAFL	C3Y9I0_BRAFL	C3Y5M2	C3Y9I0	Uncharacterized protein.	Uncharacterized protein.	0.726
C3Y5M2_BRAFL	C3YD41_BRAFL	C3Y5M2	C3YD41	Uncharacterized protein.	RPOL4c domain-containing protein.	0.682
C3Y5M2_BRAFL	C3YEB3_BRAFL	C3Y5M2	C3YEB3	Uncharacterized protein.	Uncharacterized protein.	0.965
C3Y5M2_BRAFL	C3YEB7_BRAFL	C3Y5M2	C3YEB7	Uncharacterized protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.965
C3Y5M2_BRAFL	C3YH75_BRAFL	C3Y5M2	C3YH75	Uncharacterized protein.	Uncharacterized protein.	0.999
C3Y5M2_BRAFL	C3YRU6_BRAFL	C3Y5M2	C3YRU6	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
C3Y5M2_BRAFL	C3YW52_BRAFL	C3Y5M2	C3YW52	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3Y5M2_BRAFL	C3YY41_BRAFL	C3Y5M2	C3YY41	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.497
C3Y5M2_BRAFL	C3YYC3_BRAFL	C3Y5M2	C3YYC3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.968
C3Y5M2_BRAFL	C3Z3J6_BRAFL	C3Y5M2	C3Z3J6	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
C3Y5M2_BRAFL	C3Z918_BRAFL	C3Y5M2	C3Z918	Uncharacterized protein.	RPOLD domain-containing protein.	0.981
C3Y5M2_BRAFL	C3ZBW5_BRAFL	C3Y5M2	C3ZBW5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3Y5M2_BRAFL	C3ZQF0_BRAFL	C3Y5M2	C3ZQF0	Uncharacterized protein.	Uncharacterized protein.	0.999
C3Y5U9_BRAFL	C3Y2C4_BRAFL	C3Y5U9	C3Y2C4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.576