(50 nodes) Structural constituent of cytoskeleton network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZXL7_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (593 aa)
	C3XQZ8_BRAFL	Spectrin beta chain; Belongs to the spectrin family. (2357 aa)
	C3XRA0_BRAFL	Uncharacterized protein; Belongs to the actin family. (448 aa)
	C3XSU3_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	C3Y0G3_BRAFL	ANK_REP_REGION domain-containing protein. (150 aa)
	C3Y0N1_BRAFL	Uncharacterized protein. (5098 aa)
	C3Y2F5_BRAFL	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (453 aa)
	C3Y2K0_BRAFL	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (298 aa)
	C3Y2K1_BRAFL	Tubulin domain-containing protein. (125 aa)
	C3Y2M3_BRAFL	Tubulin_C domain-containing protein. (154 aa)
	C3Y2M4_BRAFL	Tubulin domain-containing protein; Belongs to the tubulin family. (575 aa)
	C3Y3Q1_BRAFL	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	C3Y497_BRAFL	Aldolase_II domain-containing protein. (920 aa)
	C3Y498_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (404 aa)
	C3YBY6_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (416 aa)
	C3YF46_BRAFL	Uncharacterized protein. (420 aa)
	C3YI54_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (416 aa)
	C3YMF1_BRAFL	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	C3YMF2_BRAFL	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (331 aa)
	C3YPY1_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (619 aa)
	C3YQY5_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (327 aa)
	C3YQY6_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (238 aa)
	C3YQY7_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (359 aa)
	C3YQZ1_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (347 aa)
	C3YQZ2_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (350 aa)
	C3YRS0_BRAFL	Uncharacterized protein; Belongs to the tubulin family. (459 aa)
	C3YV55_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (454 aa)
	C3YW48_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (343 aa)
	C3Z395_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	C3Z7N6_BRAFL	Uncharacterized protein. (223 aa)
	C3Z8K3_BRAFL	Tubulin_C domain-containing protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (293 aa)
	C3Z9Y1_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (549 aa)
	C3ZBY6_BRAFL	Uncharacterized protein. (229 aa)
	C3ZD04_BRAFL	Uncharacterized protein. (2081 aa)
	C3ZE81_BRAFL	Uncharacterized protein. (517 aa)
	C3ZG99_BRAFL	Uncharacterized protein. (334 aa)
	C3ZGA4_BRAFL	FERM domain-containing protein. (242 aa)
	C3ZHD8_BRAFL	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (460 aa)
	C3ZI60_BRAFL	Uncharacterized protein. (555 aa)
	C3ZJH8_BRAFL	Tubulin domain-containing protein; Belongs to the tubulin family. (419 aa)
	C3ZL48_BRAFL	Uncharacterized protein. (402 aa)
	C3ZMQ7_BRAFL	Uncharacterized protein. (445 aa)
	C3ZP46_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (322 aa)
	C3ZPW0_BRAFL	Tubulin_C domain-containing protein. (150 aa)
	C3ZQA4_BRAFL	Spectrin beta chain; Belongs to the spectrin family. (2039 aa)
	C3ZRF8_BRAFL	ANK_REP_REGION domain-containing protein. (501 aa)
	C3ZUW6_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	C3ZUW8_BRAFL	Tubulin_C domain-containing protein. (84 aa)
	C3ZV76_BRAFL	Tubulin domain-containing protein; Belongs to the tubulin family. (439 aa)
	C3ZWF0_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (989 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQZ8_BRAFL	C3Y0G3_BRAFL	C3XQZ8	C3Y0G3	Spectrin beta chain; Belongs to the spectrin family.	ANK_REP_REGION domain-containing protein.	0.539
C3XQZ8_BRAFL	C3Z7N6_BRAFL	C3XQZ8	C3Z7N6	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.539
C3XQZ8_BRAFL	C3ZBY6_BRAFL	C3XQZ8	C3ZBY6	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.539
C3XQZ8_BRAFL	C3ZRF8_BRAFL	C3XQZ8	C3ZRF8	Spectrin beta chain; Belongs to the spectrin family.	ANK_REP_REGION domain-containing protein.	0.539
C3XSU3_BRAFL	C3Y2F5_BRAFL	C3XSU3	C3Y2F5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.970
C3XSU3_BRAFL	C3Y3Q1_BRAFL	C3XSU3	C3Y3Q1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.970
C3XSU3_BRAFL	C3YMF1_BRAFL	C3XSU3	C3YMF1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.970
C3XSU3_BRAFL	C3YMF2_BRAFL	C3XSU3	C3YMF2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.679
C3XSU3_BRAFL	C3YRS0_BRAFL	C3XSU3	C3YRS0	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Belongs to the tubulin family.	0.680
C3XSU3_BRAFL	C3ZE81_BRAFL	C3XSU3	C3ZE81	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.665
C3Y0G3_BRAFL	C3XQZ8_BRAFL	C3Y0G3	C3XQZ8	ANK_REP_REGION domain-containing protein.	Spectrin beta chain; Belongs to the spectrin family.	0.539
C3Y0G3_BRAFL	C3Y0N1_BRAFL	C3Y0G3	C3Y0N1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.539
C3Y0G3_BRAFL	C3ZQA4_BRAFL	C3Y0G3	C3ZQA4	ANK_REP_REGION domain-containing protein.	Spectrin beta chain; Belongs to the spectrin family.	0.539
C3Y0N1_BRAFL	C3Y0G3_BRAFL	C3Y0N1	C3Y0G3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.539
C3Y0N1_BRAFL	C3Z7N6_BRAFL	C3Y0N1	C3Z7N6	Uncharacterized protein.	Uncharacterized protein.	0.539
C3Y0N1_BRAFL	C3ZBY6_BRAFL	C3Y0N1	C3ZBY6	Uncharacterized protein.	Uncharacterized protein.	0.539
C3Y0N1_BRAFL	C3ZRF8_BRAFL	C3Y0N1	C3ZRF8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.539
C3Y2F5_BRAFL	C3XSU3_BRAFL	C3Y2F5	C3XSU3	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.970
C3Y2F5_BRAFL	C3Y2K0_BRAFL	C3Y2F5	C3Y2K0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.677
C3Y2F5_BRAFL	C3Y2K1_BRAFL	C3Y2F5	C3Y2K1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.653