(100 nodes) Copper ion binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YB89_BRAFL	Uncharacterized protein. (135 aa)
	C3YAF6_BRAFL	Uncharacterized protein. (776 aa)
	C3YAF5_BRAFL	HTH CENPB-type domain-containing protein. (1050 aa)
	C3Y9E8_BRAFL	Uncharacterized protein. (1218 aa)
	C3Y957_BRAFL	Uncharacterized protein. (1258 aa)
	C3Y7V8_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (597 aa)
	C3Y710_BRAFL	DUF294 domain-containing protein. (611 aa)
	C3Y5W2_BRAFL	Uncharacterized protein. (1035 aa)
	C3Y5W1_BRAFL	Uncharacterized protein. (120 aa)
	C3Y5V9_BRAFL	Uncharacterized protein. (272 aa)
	C3Y5P5_BRAFL	CutC domain-containing protein. (249 aa)
	C3Y4Q4_BRAFL	V-SNARE coiled-coil homology domain-containing protein; Belongs to the multicopper oxidase family. (1210 aa)
	C3Y4Q0_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (507 aa)
	C3XZU5_BRAFL	DOMON domain-containing protein. (955 aa)
	C3ZPB1_BRAFL	Uncharacterized protein. (466 aa)
	C3ZP42_BRAFL	DOMON domain-containing protein. (479 aa)
	C3ZMN1_BRAFL	F5/8 type C domain-containing protein. (147 aa)
	C3ZML6_BRAFL	F5/8 type C domain-containing protein. (147 aa)
	C3ZMD9_BRAFL	Uncharacterized protein. (64 aa)
	C3ZM91_BRAFL	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (156 aa)
	C3ZLH3_BRAFL	DOMON domain-containing protein. (608 aa)
	C3ZLH2_BRAFL	DOMON domain-containing protein. (580 aa)
	C3ZHP0_BRAFL	DOMON domain-containing protein. (483 aa)
	C3ZH87_BRAFL	DOMON domain-containing protein. (487 aa)
	C3ZH86_BRAFL	DOMON domain-containing protein. (631 aa)
	C3ZH74_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (755 aa)
	C3ZGU5_BRAFL	Uncharacterized protein. (317 aa)
	C3ZGQ4_BRAFL	Cu2_monoox_C domain-containing protein. (435 aa)
	C3ZG55_BRAFL	Uncharacterized protein. (533 aa)
	C3ZEB2_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (1057 aa)
	C3ZEB1_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (1194 aa)
	C3ZBM5_BRAFL	DOMON domain-containing protein. (453 aa)
	C3ZAI5_BRAFL	Sod_Cu domain-containing protein. (132 aa)
	C3Z518_BRAFL	DOMON domain-containing protein. (537 aa)
	C3ZSX9_BRAFL	F5/8 type C domain-containing protein. (199 aa)
	C3ZSX4_BRAFL	Uncharacterized protein. (306 aa)
	C3ZSD0_BRAFL	DOMON domain-containing protein. (527 aa)
	C3ZRV0_BRAFL	F5/8 type C domain-containing protein. (902 aa)
	C3ZRG7_BRAFL	DUF294 domain-containing protein. (556 aa)
	C3ZR12_BRAFL	Amine oxidase. (671 aa)
	C3ZQX2_BRAFL	DOMON domain-containing protein. (711 aa)
	COII	Cytochrome c oxidase subunit 2; Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol- cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and t [...] (230 aa)
	C3ZZ01_BRAFL	Plastocyanin-like domain-containing protein. (63 aa)
	C3ZZ00_BRAFL	Plastocyanin-like domain-containing protein. (465 aa)
	C3ZYZ9_BRAFL	TPR_REGION domain-containing protein. (1320 aa)
	C3Z4C6_BRAFL	F5/8 type C domain-containing protein. (232 aa)
	C3Z3X0_BRAFL	HMA domain-containing protein. (259 aa)
	C3Z220_BRAFL	Uncharacterized protein. (448 aa)
	C3Z117_BRAFL	Amine oxidase. (634 aa)
	C3Z115_BRAFL	Amine oxidase. (590 aa)
	C3Z114_BRAFL	Amine oxidase. (686 aa)
	C3Z112_BRAFL	Amine oxidase. (732 aa)
	C3Z111_BRAFL	Amine oxidase. (728 aa)
	C3Z0Z6_BRAFL	Amine oxidase. (782 aa)
	C3Z0X3_BRAFL	Uncharacterized protein. (197 aa)
	C3Z0B2_BRAFL	DUF294 domain-containing protein. (765 aa)
	C3YZX4_BRAFL	DOMON domain-containing protein. (523 aa)
	C3YYU1_BRAFL	TGc domain-containing protein. (1439 aa)
	C3YYU0_BRAFL	Protein kinase domain-containing protein; Belongs to the multicopper oxidase family. (2174 aa)
	C3YYT6_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (655 aa)
	C3ZWI4_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (637 aa)
	C3ZW77_BRAFL	Uncharacterized protein. (457 aa)
	C3ZTP1_BRAFL	DOMON domain-containing protein. (601 aa)
	C3XVS2_BRAFL	DOMON domain-containing protein. (160 aa)
	C3XW42_BRAFL	Uncharacterized protein. (483 aa)
	C3XW99_BRAFL	Uncharacterized protein. (1683 aa)
	C3XWW5_BRAFL	Uncharacterized protein. (879 aa)
	C3XXH5_BRAFL	DUF294 domain-containing protein. (722 aa)
	C3XZ90_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (622 aa)
	C3XT45_BRAFL	DUF294 domain-containing protein. (674 aa)
	C3XT52_BRAFL	DUF294 domain-containing protein. (591 aa)
	C3XV46_BRAFL	Uncharacterized protein. (615 aa)
	C3XV47_BRAFL	Cu2_monoox_C domain-containing protein. (251 aa)
	C3XV49_BRAFL	DOMON domain-containing protein. (121 aa)
	C3XV50_BRAFL	Uncharacterized protein. (477 aa)
	C3XVR0_BRAFL	Cu2_monoox_C domain-containing protein. (253 aa)
	C3XVR1_BRAFL	DOMON domain-containing protein. (718 aa)
	C3YYT5_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (696 aa)
	C3YYK2_BRAFL	Uncharacterized protein. (457 aa)
	C3YYK1_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (623 aa)
	C3YW97_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (678 aa)
	C3YVT0_BRAFL	DOMON domain-containing protein. (342 aa)
	C3YV87_BRAFL	FGE-sulfatase domain-containing protein. (372 aa)
	C3YRP9_BRAFL	Uncharacterized protein. (101 aa)
	C3YQ66_BRAFL	Uncharacterized protein. (520 aa)
	C3YPN9_BRAFL	DOMON domain-containing protein. (657 aa)
	C3YPN8_BRAFL	DOMON domain-containing protein. (473 aa)
	C3YPG5_BRAFL	Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family. (355 aa)
	C3YHA3_BRAFL	DOMON domain-containing protein. (636 aa)
	C3YHA2_BRAFL	DOMON domain-containing protein. (534 aa)
	C3YHA0_BRAFL	DOMON domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (1177 aa)
	C3YGF0_BRAFL	DOMON domain-containing protein. (590 aa)
	C3YG81_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (522 aa)
	C3YFW7_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (603 aa)
	C3YF19_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (642 aa)
	C3YE29_BRAFL	Uncharacterized protein; Belongs to the multicopper oxidase family. (816 aa)
	C3YE28_BRAFL	Uncharacterized protein. (333 aa)
	C3YC57_BRAFL	DOMON domain-containing protein. (682 aa)
	C3YC56_BRAFL	DOMON domain-containing protein. (655 aa)
	C3YBR9_BRAFL	DOMON domain-containing protein. (625 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XT45_BRAFL	C3XW99_BRAFL	C3XT45	C3XW99	DUF294 domain-containing protein.	Uncharacterized protein.	0.413
C3XT52_BRAFL	C3XW99_BRAFL	C3XT52	C3XW99	DUF294 domain-containing protein.	Uncharacterized protein.	0.413
C3XW42_BRAFL	C3XW99_BRAFL	C3XW42	C3XW99	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3XT45_BRAFL	C3XW99	C3XT45	Uncharacterized protein.	DUF294 domain-containing protein.	0.413
C3XW99_BRAFL	C3XT52_BRAFL	C3XW99	C3XT52	Uncharacterized protein.	DUF294 domain-containing protein.	0.413
C3XW99_BRAFL	C3XW42_BRAFL	C3XW99	C3XW42	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3XWW5_BRAFL	C3XW99	C3XWW5	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3XXH5_BRAFL	C3XW99	C3XXH5	Uncharacterized protein.	DUF294 domain-containing protein.	0.413
C3XW99_BRAFL	C3XZ90_BRAFL	C3XW99	C3XZ90	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.424
C3XW99_BRAFL	C3Y4Q0_BRAFL	C3XW99	C3Y4Q0	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.413
C3XW99_BRAFL	C3Y4Q4_BRAFL	C3XW99	C3Y4Q4	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein; Belongs to the multicopper oxidase family.	0.413
C3XW99_BRAFL	C3Y5P5_BRAFL	C3XW99	C3Y5P5	Uncharacterized protein.	CutC domain-containing protein.	0.754
C3XW99_BRAFL	C3Y710_BRAFL	C3XW99	C3Y710	Uncharacterized protein.	DUF294 domain-containing protein.	0.413
C3XW99_BRAFL	C3Y7V8_BRAFL	C3XW99	C3Y7V8	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.424
C3XW99_BRAFL	C3Y957_BRAFL	C3XW99	C3Y957	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3Y9E8_BRAFL	C3XW99	C3Y9E8	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3YB89_BRAFL	C3XW99	C3YB89	Uncharacterized protein.	Uncharacterized protein.	0.707
C3XW99_BRAFL	C3YE28_BRAFL	C3XW99	C3YE28	Uncharacterized protein.	Uncharacterized protein.	0.413
C3XW99_BRAFL	C3YE29_BRAFL	C3XW99	C3YE29	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.413
C3XW99_BRAFL	C3YF19_BRAFL	C3XW99	C3YF19	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.413