(110 nodes) Mitochondrial outer membrane network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XR89_BRAFL	MOSC domain-containing protein. (329 aa)
	C3XRB3_BRAFL	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (351 aa)
	C3XRP1_BRAFL	Uncharacterized protein. (1157 aa)
	C3XS07_BRAFL	Uncharacterized protein. (516 aa)
	C3XTE3_BRAFL	Uncharacterized protein. (258 aa)
	C3XTI0_BRAFL	Uncharacterized protein. (264 aa)
	C3XVG1_BRAFL	Uncharacterized protein. (1015 aa)
	C3XVY8_BRAFL	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (414 aa)
	C3XW83_BRAFL	MIT domain-containing protein. (653 aa)
	C3XWC0_BRAFL	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (178 aa)
	C3XWE9_BRAFL	Tafazzin family protein; Belongs to the taffazin family. (261 aa)
	C3XY20_BRAFL	Uncharacterized protein. (325 aa)
	C3XZS1_BRAFL	RING-CH-type domain-containing protein. (297 aa)
	C3Y0N0_BRAFL	MOSC domain-containing protein. (327 aa)
	C3Y0N4_BRAFL	Uncharacterized protein. (337 aa)
	C3Y193_BRAFL	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (480 aa)
	C3Y207_BRAFL	Uncharacterized protein. (367 aa)
	C3Y2C9_BRAFL	Uncharacterized protein. (609 aa)
	C3Y2Y4_BRAFL	Uncharacterized protein. (581 aa)
	C3Y381_BRAFL	Elp3 domain-containing protein. (343 aa)
	C3Y3B8_BRAFL	DAO domain-containing protein. (342 aa)
	C3Y4R6_BRAFL	AMP-binding domain-containing protein. (681 aa)
	C3Y743_BRAFL	Uncharacterized protein. (287 aa)
	C3Y7G9_BRAFL	Uncharacterized protein. (227 aa)
	C3Y7I8_BRAFL	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (321 aa)
	C3Y8C0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (647 aa)
	C3Y9L4_BRAFL	Uncharacterized protein. (2990 aa)
	C3YCA7_BRAFL	Amine oxidase. (440 aa)
	C3YCQ3_BRAFL	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (961 aa)
	C3YCT7_BRAFL	RING-CH-type domain-containing protein. (282 aa)
	C3YDJ4_BRAFL	RING-type domain-containing protein. (299 aa)
	C3YF66_BRAFL	Uncharacterized protein. (155 aa)
	C3YF93_BRAFL	Mab-21 domain-containing protein. (558 aa)
	C3YGV7_BRAFL	FAD_binding_3 domain-containing protein. (318 aa)
	C3YJ58_BRAFL	Uncharacterized protein. (1548 aa)
	C3YJ97_BRAFL	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (615 aa)
	C3YKE2_BRAFL	Uncharacterized protein. (3136 aa)
	C3YL66_BRAFL	Uncharacterized protein. (245 aa)
	C3YLM1_BRAFL	Mab-21 domain-containing protein. (457 aa)
	C3YN24_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (889 aa)
	C3YPM9_BRAFL	Amine oxidase. (454 aa)
	C3YPN5_BRAFL	Amine oxidase. (443 aa)
	C3YPS7_BRAFL	Uncharacterized protein. (480 aa)
	C3YQV8_BRAFL	Uncharacterized protein; Belongs to the FGGY kinase family. (557 aa)
	C3YQW5_BRAFL	Uncharacterized protein; Belongs to the peptidase C19 family. (1453 aa)
	C3YR44_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (724 aa)
	C3YRB3_BRAFL	Sidoreflexin. (324 aa)
	C3YRF2_BRAFL	MIEAP domain-containing protein. (756 aa)
	C3YW54_BRAFL	PKS_ER domain-containing protein. (263 aa)
	C3YXD7_BRAFL	PKS_ER domain-containing protein. (326 aa)
	C3YXF1_BRAFL	Uncharacterized protein. (289 aa)
	C3YZR5_BRAFL	Uncharacterized protein. (600 aa)
	C3YZV1_BRAFL	MIEAP domain-containing protein. (453 aa)
	C3Z1Z1_BRAFL	3'-5' exonuclease domain-containing protein. (505 aa)
	C3Z332_BRAFL	Uncharacterized protein. (829 aa)
	C3Z367_BRAFL	Uncharacterized protein. (885 aa)
	C3Z3Q2_BRAFL	MOSC domain-containing protein. (304 aa)
	C3Z476_BRAFL	Tudor domain-containing protein. (177 aa)
	C3Z502_BRAFL	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (434 aa)
	C3Z5P4_BRAFL	AMP-binding domain-containing protein. (647 aa)
	C3Z5X2_BRAFL	AAA domain-containing protein; Belongs to the AAA ATPase family. (303 aa)
	C3Z767_BRAFL	Uncharacterized protein. (151 aa)
	C3Z769_BRAFL	Uncharacterized protein. (154 aa)
	C3Z770_BRAFL	Uncharacterized protein. (149 aa)
	C3ZAE2_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (707 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZAV7_BRAFL	Uncharacterized protein; Belongs to the GST superfamily. (334 aa)
	C3ZBY7_BRAFL	Uncharacterized protein. (1553 aa)
	C3ZBY9_BRAFL	C2H2-type domain-containing protein. (1592 aa)
	C3ZBZ0_BRAFL	Uncharacterized protein. (1321 aa)
	C3ZBZ2_BRAFL	Uncharacterized protein. (1771 aa)
	C3ZCG5_BRAFL	AMP-binding domain-containing protein. (668 aa)
	C3ZCJ0_BRAFL	Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (381 aa)
	C3ZCJ7_BRAFL	Queuine tRNA-ribosyltransferase accessory subunit 2; Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine); Belongs to the queuine tRNA-ribosyltransferase family. QTRT2 subfamily. (419 aa)
	C3ZD98_BRAFL	Pyr_redox_2 domain-containing protein. (353 aa)
	C3ZDA0_BRAFL	Pyr_redox_2 domain-containing protein. (373 aa)
	C3ZDA1_BRAFL	Uncharacterized protein. (343 aa)
	C3ZDA2_BRAFL	Pyr_redox_2 domain-containing protein. (374 aa)
	C3ZDC1_BRAFL	Amine oxidase. (592 aa)
	C3ZDP9_BRAFL	Uncharacterized protein. (147 aa)
	C3ZE93_BRAFL	Amine oxidase. (442 aa)
	C3ZEA0_BRAFL	Amine oxidase. (512 aa)
	C3ZEL9_BRAFL	Amine oxidase. (501 aa)
	C3ZFB2_BRAFL	Uncharacterized protein. (164 aa)
	C3ZFV3_BRAFL	Uncharacterized protein. (649 aa)
	C3ZGJ7_BRAFL	Uncharacterized protein. (1265 aa)
	C3ZHT2_BRAFL	Uncharacterized protein. (281 aa)
	C3ZI98_BRAFL	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (776 aa)
	C3ZK47_BRAFL	POTRA domain-containing protein. (385 aa)
	C3ZKY4_BRAFL	Uncharacterized protein. (291 aa)
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)
	C3ZM59_BRAFL	Uncharacterized protein. (279 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)
	C3ZV92_BRAFL	DUF1279 domain-containing protein. (121 aa)
	C3ZW15_BRAFL	Uncharacterized protein. (246 aa)
	C3ZW16_BRAFL	Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family. (551 aa)
	CID2A_BRAFL	CDGSH iron-sulfur domain-containing protein 2 homolog A; Belongs to the CISD protein family. CISD2 subfamily. (131 aa)
	C3ZXV0_BRAFL	LRRNT domain-containing protein. (531 aa)
	C3ZZ47_BRAFL	Uncharacterized protein. (154 aa)
	C3ZZI9_BRAFL	Uncharacterized protein. (335 aa)
	C3ZZJ3_BRAFL	Uncharacterized protein. (314 aa)
	C3ZZZ0_BRAFL	Uncharacterized protein. (525 aa)
	CID2B_BRAFL	CDGSH iron-sulfur domain-containing protein 2 homolog B; Belongs to the CISD protein family. CISD2 subfamily. (131 aa)
	C3XPP8_BRAFL	J domain-containing protein. (576 aa)
	C3XPU1_BRAFL	Tubulin_3 domain-containing protein. (519 aa)
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XR88_BRAFL	MOSC domain-containing protein. (329 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP8_BRAFL	C3XTE3_BRAFL	C3XPP8	C3XTE3	J domain-containing protein.	Uncharacterized protein.	0.565
C3XPP8_BRAFL	C3Y0N4_BRAFL	C3XPP8	C3Y0N4	J domain-containing protein.	Uncharacterized protein.	0.481
C3XPP8_BRAFL	C3ZK47_BRAFL	C3XPP8	C3ZK47	J domain-containing protein.	POTRA domain-containing protein.	0.566
C3XPP8_BRAFL	C3ZKY4_BRAFL	C3XPP8	C3ZKY4	J domain-containing protein.	Uncharacterized protein.	0.473
C3XPY9_BRAFL	C3XRP1_BRAFL	C3XPY9	C3XRP1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.579
C3XPY9_BRAFL	C3XS07_BRAFL	C3XPY9	C3XS07	Protein kinase domain-containing protein.	Uncharacterized protein.	0.661
C3XPY9_BRAFL	C3XVY8_BRAFL	C3XPY9	C3XVY8	Protein kinase domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.971
C3XPY9_BRAFL	C3Y0N4_BRAFL	C3XPY9	C3Y0N4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.766
C3XPY9_BRAFL	C3Y2C9_BRAFL	C3XPY9	C3Y2C9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.971
C3XPY9_BRAFL	C3YF66_BRAFL	C3XPY9	C3YF66	Protein kinase domain-containing protein.	Uncharacterized protein.	0.639
C3XPY9_BRAFL	C3YJ97_BRAFL	C3XPY9	C3YJ97	Protein kinase domain-containing protein.	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.	0.579
C3XPY9_BRAFL	C3YL66_BRAFL	C3XPY9	C3YL66	Protein kinase domain-containing protein.	Uncharacterized protein.	0.841
C3XPY9_BRAFL	C3YN24_BRAFL	C3XPY9	C3YN24	Protein kinase domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.722
C3XPY9_BRAFL	C3YQW5_BRAFL	C3XPY9	C3YQW5	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.445
C3XPY9_BRAFL	C3YR44_BRAFL	C3XPY9	C3YR44	Protein kinase domain-containing protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.722
C3XPY9_BRAFL	C3YZR5_BRAFL	C3XPY9	C3YZR5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.971
C3XPY9_BRAFL	C3Z502_BRAFL	C3XPY9	C3Z502	Protein kinase domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.997
C3XPY9_BRAFL	C3ZAE2_BRAFL	C3XPY9	C3ZAE2	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.749
C3XPY9_BRAFL	C3ZDP9_BRAFL	C3XPY9	C3ZDP9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.593
C3XPY9_BRAFL	C3ZGJ7_BRAFL	C3XPY9	C3ZGJ7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.846