(30 nodes) Rough endoplasmic reticulum network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPY8_BRAFL	Uncharacterized protein. (1177 aa)
	C3XS18_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (571 aa)
	C3XS64_BRAFL	Uncharacterized protein. (656 aa)
	C3XUN6_BRAFL	J domain-containing protein. (742 aa)
	C3XV76_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (769 aa)
	C3XVP6_BRAFL	Ribosomal_L6e_N domain-containing protein. (256 aa)
	C3XZE9_BRAFL	SRP54 domain-containing protein. (629 aa)
	C3Y043_BRAFL	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (196 aa)
	C3Y0B9_BRAFL	Uncharacterized protein. (229 aa)
	C3Y187_BRAFL	Uncharacterized protein. (367 aa)
	C3Y239_BRAFL	Uncharacterized protein. (511 aa)
	C3Y8C0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (647 aa)
	C3Y9J5_BRAFL	Uncharacterized protein. (674 aa)
	C3YCM7_BRAFL	Uncharacterized protein. (89 aa)
	C3YCT4_BRAFL	Uncharacterized protein. (1589 aa)
	C3YLN9_BRAFL	Plug_translocon domain-containing protein. (415 aa)
	C3YLZ0_BRAFL	Uncharacterized protein. (215 aa)
	C3Z5M6_BRAFL	Alpha-2-MRAP_C domain-containing protein. (133 aa)
	C3Z6V3_BRAFL	Ribosomal_L18e/L15P domain-containing protein. (188 aa)
	C3ZE63_BRAFL	CBM20 domain-containing protein. (316 aa)
	C3ZGZ4_BRAFL	Uncharacterized protein. (68 aa)
	C3ZHP5_BRAFL	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	C3ZHV0_BRAFL	EXPERA domain-containing protein. (168 aa)
	C3ZHZ1_BRAFL	SUN domain-containing protein. (1269 aa)
	C3ZSE9_BRAFL	Fe2OG dioxygenase domain-containing protein. (679 aa)
	C3ZW96_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (784 aa)
	C3ZWW4_BRAFL	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (94 aa)
	C3ZX83_BRAFL	Uncharacterized protein. (452 aa)
	C3ZXE7_BRAFL	Uncharacterized protein. (58 aa)
	C3ZXH8_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (730 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XUN6_BRAFL	C3XZE9_BRAFL	C3XUN6	C3XZE9	J domain-containing protein.	SRP54 domain-containing protein.	0.788
C3XUN6_BRAFL	C3YLN9_BRAFL	C3XUN6	C3YLN9	J domain-containing protein.	Plug_translocon domain-containing protein.	0.998
C3XUN6_BRAFL	C3YLZ0_BRAFL	C3XUN6	C3YLZ0	J domain-containing protein.	Uncharacterized protein.	0.758
C3XUN6_BRAFL	C3ZGZ4_BRAFL	C3XUN6	C3ZGZ4	J domain-containing protein.	Uncharacterized protein.	0.997
C3XUN6_BRAFL	C3ZWW4_BRAFL	C3XUN6	C3ZWW4	J domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.997
C3XV76_BRAFL	C3YLN9_BRAFL	C3XV76	C3YLN9	Uncharacterized protein; Belongs to the peptidase C14A family.	Plug_translocon domain-containing protein.	0.431
C3XVP6_BRAFL	C3XZE9_BRAFL	C3XVP6	C3XZE9	Ribosomal_L6e_N domain-containing protein.	SRP54 domain-containing protein.	0.816
C3XVP6_BRAFL	C3YLN9_BRAFL	C3XVP6	C3YLN9	Ribosomal_L6e_N domain-containing protein.	Plug_translocon domain-containing protein.	0.911
C3XVP6_BRAFL	C3YLZ0_BRAFL	C3XVP6	C3YLZ0	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.816
C3XVP6_BRAFL	C3Z6V3_BRAFL	C3XVP6	C3Z6V3	Ribosomal_L6e_N domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.999
C3XVP6_BRAFL	C3ZGZ4_BRAFL	C3XVP6	C3ZGZ4	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.875
C3XVP6_BRAFL	C3ZHP5_BRAFL	C3XVP6	C3ZHP5	Ribosomal_L6e_N domain-containing protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
C3XVP6_BRAFL	C3ZWW4_BRAFL	C3XVP6	C3ZWW4	Ribosomal_L6e_N domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.903
C3XVP6_BRAFL	C3ZX83_BRAFL	C3XVP6	C3ZX83	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.794
C3XVP6_BRAFL	C3ZXE7_BRAFL	C3XVP6	C3ZXE7	Ribosomal_L6e_N domain-containing protein.	Uncharacterized protein.	0.999
C3XZE9_BRAFL	C3XUN6_BRAFL	C3XZE9	C3XUN6	SRP54 domain-containing protein.	J domain-containing protein.	0.788
C3XZE9_BRAFL	C3XVP6_BRAFL	C3XZE9	C3XVP6	SRP54 domain-containing protein.	Ribosomal_L6e_N domain-containing protein.	0.816
C3XZE9_BRAFL	C3YLN9_BRAFL	C3XZE9	C3YLN9	SRP54 domain-containing protein.	Plug_translocon domain-containing protein.	0.909
C3XZE9_BRAFL	C3YLZ0_BRAFL	C3XZE9	C3YLZ0	SRP54 domain-containing protein.	Uncharacterized protein.	0.998
C3XZE9_BRAFL	C3Z6V3_BRAFL	C3XZE9	C3Z6V3	SRP54 domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.816