(5 nodes) Nucleotide-excision repair, DNA incision, 3-to lesion network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZNX8_BRAFL	Uncharacterized protein. (233 aa)
	C3Y7V3_BRAFL	Uncharacterized protein. (539 aa)
	C3Y7R7_BRAFL	XPGI domain-containing protein. (162 aa)
	C3ZZX7_BRAFL	Uncharacterized protein. (507 aa)
	C3ZNW9_BRAFL	ERCC4 domain-containing protein. (515 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y7R7_BRAFL	C3Y7V3_BRAFL	C3Y7R7	C3Y7V3	XPGI domain-containing protein.	Uncharacterized protein.	0.884
C3Y7R7_BRAFL	C3ZNW9_BRAFL	C3Y7R7	C3ZNW9	XPGI domain-containing protein.	ERCC4 domain-containing protein.	0.635
C3Y7R7_BRAFL	C3ZNX8_BRAFL	C3Y7R7	C3ZNX8	XPGI domain-containing protein.	Uncharacterized protein.	0.635
C3Y7R7_BRAFL	C3ZZX7_BRAFL	C3Y7R7	C3ZZX7	XPGI domain-containing protein.	Uncharacterized protein.	0.594
C3Y7V3_BRAFL	C3Y7R7_BRAFL	C3Y7V3	C3Y7R7	Uncharacterized protein.	XPGI domain-containing protein.	0.884
C3Y7V3_BRAFL	C3ZNW9_BRAFL	C3Y7V3	C3ZNW9	Uncharacterized protein.	ERCC4 domain-containing protein.	0.635
C3Y7V3_BRAFL	C3ZNX8_BRAFL	C3Y7V3	C3ZNX8	Uncharacterized protein.	Uncharacterized protein.	0.635
C3ZNW9_BRAFL	C3Y7R7_BRAFL	C3ZNW9	C3Y7R7	ERCC4 domain-containing protein.	XPGI domain-containing protein.	0.635
C3ZNW9_BRAFL	C3Y7V3_BRAFL	C3ZNW9	C3Y7V3	ERCC4 domain-containing protein.	Uncharacterized protein.	0.635
C3ZNW9_BRAFL	C3ZNX8_BRAFL	C3ZNW9	C3ZNX8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.975
C3ZNW9_BRAFL	C3ZZX7_BRAFL	C3ZNW9	C3ZZX7	ERCC4 domain-containing protein.	Uncharacterized protein.	0.635
C3ZNX8_BRAFL	C3Y7R7_BRAFL	C3ZNX8	C3Y7R7	Uncharacterized protein.	XPGI domain-containing protein.	0.635
C3ZNX8_BRAFL	C3Y7V3_BRAFL	C3ZNX8	C3Y7V3	Uncharacterized protein.	Uncharacterized protein.	0.635
C3ZNX8_BRAFL	C3ZNW9_BRAFL	C3ZNX8	C3ZNW9	Uncharacterized protein.	ERCC4 domain-containing protein.	0.975
C3ZNX8_BRAFL	C3ZZX7_BRAFL	C3ZNX8	C3ZZX7	Uncharacterized protein.	Uncharacterized protein.	0.635
C3ZZX7_BRAFL	C3Y7R7_BRAFL	C3ZZX7	C3Y7R7	Uncharacterized protein.	XPGI domain-containing protein.	0.594
C3ZZX7_BRAFL	C3ZNW9_BRAFL	C3ZZX7	C3ZNW9	Uncharacterized protein.	ERCC4 domain-containing protein.	0.635
C3ZZX7_BRAFL	C3ZNX8_BRAFL	C3ZZX7	C3ZNX8	Uncharacterized protein.	Uncharacterized protein.	0.635