(20 nodes) DNA methylation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XYZ4_BRAFL	Uncharacterized protein. (1475 aa)
	C3ZVZ2_BRAFL	Uncharacterized protein; Belongs to the MT-A70-like family. (244 aa)
	C3ZRS9_BRAFL	MTS domain-containing protein. (219 aa)
	C3ZRS8_BRAFL	Uncharacterized protein. (193 aa)
	C3ZQT0_BRAFL	SWIRM domain-containing protein. (435 aa)
	C3ZQS9_BRAFL	CW-type domain-containing protein. (144 aa)
	C3ZCL9_BRAFL	Uncharacterized protein. (584 aa)
	C3ZCL7_BRAFL	Uncharacterized protein. (791 aa)
	C3Z9D8_BRAFL	Peptidylprolyl isomerase. (311 aa)
	C3Z5S8_BRAFL	Uncharacterized protein; Belongs to the argonaute family. (734 aa)
	C3Z446_BRAFL	PPM-type phosphatase domain-containing protein. (317 aa)
	C3YZQ2_BRAFL	Cytosine-specific methyltransferase. (1275 aa)
	C3YPI5_BRAFL	Uncharacterized protein. (634 aa)
	C3YFH1_BRAFL	Uncharacterized protein. (311 aa)
	C3XXG5_BRAFL	Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA). (674 aa)
	C3XVL9_BRAFL	Uncharacterized protein. (228 aa)
	C3XUE7_BRAFL	Uncharacterized protein. (2299 aa)
	C3XSY1_BRAFL	Tudor domain-containing protein. (957 aa)
	C3XSJ5_BRAFL	Uncharacterized protein. (699 aa)
	C3XRD2_BRAFL	Uncharacterized protein. (299 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSY1_BRAFL	C3XYZ4_BRAFL	C3XSY1	C3XYZ4	Tudor domain-containing protein.	Uncharacterized protein.	0.628
C3XSY1_BRAFL	C3YPI5_BRAFL	C3XSY1	C3YPI5	Tudor domain-containing protein.	Uncharacterized protein.	0.571
C3XSY1_BRAFL	C3Z5S8_BRAFL	C3XSY1	C3Z5S8	Tudor domain-containing protein.	Uncharacterized protein; Belongs to the argonaute family.	0.700
C3XSY1_BRAFL	C3Z9D8_BRAFL	C3XSY1	C3Z9D8	Tudor domain-containing protein.	Peptidylprolyl isomerase.	0.561
C3XUE7_BRAFL	C3XYZ4_BRAFL	C3XUE7	C3XYZ4	Uncharacterized protein.	Uncharacterized protein.	0.479
C3XUE7_BRAFL	C3YPI5_BRAFL	C3XUE7	C3YPI5	Uncharacterized protein.	Uncharacterized protein.	0.587
C3XUE7_BRAFL	C3Z5S8_BRAFL	C3XUE7	C3Z5S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.626
C3XUE7_BRAFL	C3ZCL9_BRAFL	C3XUE7	C3ZCL9	Uncharacterized protein.	Uncharacterized protein.	0.427
C3XYZ4_BRAFL	C3XSY1_BRAFL	C3XYZ4	C3XSY1	Uncharacterized protein.	Tudor domain-containing protein.	0.628
C3XYZ4_BRAFL	C3XUE7_BRAFL	C3XYZ4	C3XUE7	Uncharacterized protein.	Uncharacterized protein.	0.479
C3XYZ4_BRAFL	C3YPI5_BRAFL	C3XYZ4	C3YPI5	Uncharacterized protein.	Uncharacterized protein.	0.594
C3XYZ4_BRAFL	C3Z5S8_BRAFL	C3XYZ4	C3Z5S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.710
C3XYZ4_BRAFL	C3Z9D8_BRAFL	C3XYZ4	C3Z9D8	Uncharacterized protein.	Peptidylprolyl isomerase.	0.581
C3XYZ4_BRAFL	C3ZCL7_BRAFL	C3XYZ4	C3ZCL7	Uncharacterized protein.	Uncharacterized protein.	0.488
C3XYZ4_BRAFL	C3ZCL9_BRAFL	C3XYZ4	C3ZCL9	Uncharacterized protein.	Uncharacterized protein.	0.659
C3YPI5_BRAFL	C3XSY1_BRAFL	C3YPI5	C3XSY1	Uncharacterized protein.	Tudor domain-containing protein.	0.571
C3YPI5_BRAFL	C3XUE7_BRAFL	C3YPI5	C3XUE7	Uncharacterized protein.	Uncharacterized protein.	0.587
C3YPI5_BRAFL	C3XYZ4_BRAFL	C3YPI5	C3XYZ4	Uncharacterized protein.	Uncharacterized protein.	0.594
C3YPI5_BRAFL	C3Z5S8_BRAFL	C3YPI5	C3Z5S8	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.716
C3YPI5_BRAFL	C3Z9D8_BRAFL	C3YPI5	C3Z9D8	Uncharacterized protein.	Peptidylprolyl isomerase.	0.668