(23 nodes) Transcription elongation from RNA polymerase II promoter network (Branchiostoma floridae)

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Your Input:
	C3ZET4_BRAFL	PCI domain-containing protein. (383 aa)
	C3ZQG2_BRAFL	Plus3 domain-containing protein. (605 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZZM0_BRAFL	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (90 aa)
	C3XRA2_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y647_BRAFL	TFIIS central domain-containing protein. (130 aa)
	C3ZQP1_BRAFL	Uncharacterized protein. (180 aa)
	C3YA64_BRAFL	Uncharacterized protein. (352 aa)
	C3YCV2_BRAFL	Ubiquitin-like domain-containing protein. (118 aa)
	C3YD45_BRAFL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)
	C3YDW0_BRAFL	Uncharacterized protein. (951 aa)
	C3YDW7_BRAFL	Uncharacterized protein. (946 aa)
	C3YEA6_BRAFL	WW domain-containing protein. (352 aa)
	C3YLD4_BRAFL	Uncharacterized protein. (1003 aa)
	C3YLT3_BRAFL	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (82 aa)
	C3YQ98_BRAFL	Uncharacterized protein. (614 aa)
	C3YQI6_BRAFL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
	C3YW63_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
	C3Z4E3_BRAFL	WD_REPEATS_REGION domain-containing protein. (274 aa)
	C3Z6M7_BRAFL	HHH_7 domain-containing protein. (944 aa)
	C3Z9K5_BRAFL	TFIIS N-terminal domain-containing protein. (712 aa)
	C3ZCT5_BRAFL	Uncharacterized protein. (588 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRA2_BRAFL	C3Y529_BRAFL	C3XRA2	C3Y529	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TPR_REGION domain-containing protein.	0.883
C3XRA2_BRAFL	C3Y647_BRAFL	C3XRA2	C3Y647	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TFIIS central domain-containing protein.	0.944
C3XRA2_BRAFL	C3YA64_BRAFL	C3XRA2	C3YA64	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.886
C3XRA2_BRAFL	C3YCV2_BRAFL	C3XRA2	C3YCV2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Ubiquitin-like domain-containing protein.	0.697
C3XRA2_BRAFL	C3YD45_BRAFL	C3XRA2	C3YD45	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.919
C3XRA2_BRAFL	C3YDW0_BRAFL	C3XRA2	C3YDW0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.958
C3XRA2_BRAFL	C3YDW7_BRAFL	C3XRA2	C3YDW7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.958
C3XRA2_BRAFL	C3YLD4_BRAFL	C3XRA2	C3YLD4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.962
C3XRA2_BRAFL	C3YLT3_BRAFL	C3XRA2	C3YLT3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.468
C3XRA2_BRAFL	C3YQ98_BRAFL	C3XRA2	C3YQ98	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.801
C3XRA2_BRAFL	C3YQI6_BRAFL	C3XRA2	C3YQI6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.998
C3XRA2_BRAFL	C3YW63_BRAFL	C3XRA2	C3YW63	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.720
C3XRA2_BRAFL	C3Z4E3_BRAFL	C3XRA2	C3Z4E3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	WD_REPEATS_REGION domain-containing protein.	0.560
C3XRA2_BRAFL	C3Z6M7_BRAFL	C3XRA2	C3Z6M7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	HHH_7 domain-containing protein.	0.901
C3XRA2_BRAFL	C3Z9K5_BRAFL	C3XRA2	C3Z9K5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TFIIS N-terminal domain-containing protein.	0.944
C3XRA2_BRAFL	C3ZCT5_BRAFL	C3XRA2	C3ZCT5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.944
C3XRA2_BRAFL	C3ZG24_BRAFL	C3XRA2	C3ZG24	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.906
C3XRA2_BRAFL	C3ZQG2_BRAFL	C3XRA2	C3ZQG2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Plus3 domain-containing protein.	0.894
C3XRA2_BRAFL	C3ZQP1_BRAFL	C3XRA2	C3ZQP1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.723
C3Y529_BRAFL	C3XRA2_BRAFL	C3Y529	C3XRA2	TPR_REGION domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.883