(26 nodes) Protein targeting to vacuole network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPR2_BRAFL	UBA domain-containing protein. (4212 aa)
	C3XRU7_BRAFL	Uncharacterized protein. (2383 aa)
	C3XVP4_BRAFL	VPS37 C-terminal domain-containing protein. (169 aa)
	C3XW59_BRAFL	VPS37 C-terminal domain-containing protein. (287 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	C3Y3D3_BRAFL	Uncharacterized protein. (1222 aa)
	C3Y4D1_BRAFL	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (804 aa)
	C3Y948_BRAFL	VHS domain-containing protein. (213 aa)
	C3Y9L4_BRAFL	Uncharacterized protein. (2990 aa)
	C3YAV7_BRAFL	VPS10 domain-containing protein. (246 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3YKE2_BRAFL	Uncharacterized protein. (3136 aa)
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3YL88_BRAFL	Uncharacterized protein. (980 aa)
	C3YLH1_BRAFL	Uncharacterized protein. (425 aa)
	C3XPR1_BRAFL	Chorein_N domain-containing protein. (153 aa)
	C3YXT0_BRAFL	Uncharacterized protein. (694 aa)
	C3Z4A3_BRAFL	Uncharacterized protein. (469 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3Z6W8_BRAFL	Uncharacterized protein. (248 aa)
	C3ZA99_BRAFL	Uncharacterized protein. (557 aa)
	C3ZBM8_BRAFL	PX domain-containing protein. (171 aa)
	C3ZMF8_BRAFL	Uncharacterized protein. (677 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRU7_BRAFL	C3YIE0_BRAFL	C3XRU7	C3YIE0	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.533
C3XVP4_BRAFL	C3XW59_BRAFL	C3XVP4	C3XW59	VPS37 C-terminal domain-containing protein.	VPS37 C-terminal domain-containing protein.	0.972
C3XVP4_BRAFL	C3Z6W8_BRAFL	C3XVP4	C3Z6W8	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.797
C3XW59_BRAFL	C3XVP4_BRAFL	C3XW59	C3XVP4	VPS37 C-terminal domain-containing protein.	VPS37 C-terminal domain-containing protein.	0.972
C3XW59_BRAFL	C3Z6W8_BRAFL	C3XW59	C3Z6W8	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.665
C3XYM7_BRAFL	C3ZYW7_BRAFL	C3XYM7	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3Y4D1_BRAFL	C3YIE0_BRAFL	C3Y4D1	C3YIE0	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Adaptin_N domain-containing protein.	0.716
C3Y4D1_BRAFL	C3YLH1_BRAFL	C3Y4D1	C3YLH1	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	Uncharacterized protein.	0.880
C3Y948_BRAFL	C3YAV7_BRAFL	C3Y948	C3YAV7	VHS domain-containing protein.	VPS10 domain-containing protein.	0.478
C3YAV7_BRAFL	C3Y948_BRAFL	C3YAV7	C3Y948	VPS10 domain-containing protein.	VHS domain-containing protein.	0.478
C3YIE0_BRAFL	C3XRU7_BRAFL	C3YIE0	C3XRU7	Adaptin_N domain-containing protein.	Uncharacterized protein.	0.533
C3YIE0_BRAFL	C3Y4D1_BRAFL	C3YIE0	C3Y4D1	Adaptin_N domain-containing protein.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.716
C3YIE0_BRAFL	C3Z6W8_BRAFL	C3YIE0	C3Z6W8	Adaptin_N domain-containing protein.	Uncharacterized protein.	0.445
C3YLH1_BRAFL	C3Y4D1_BRAFL	C3YLH1	C3Y4D1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.880
C3Z6W8_BRAFL	C3XVP4_BRAFL	C3Z6W8	C3XVP4	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.797
C3Z6W8_BRAFL	C3XW59_BRAFL	C3Z6W8	C3XW59	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.665
C3Z6W8_BRAFL	C3YIE0_BRAFL	C3Z6W8	C3YIE0	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.445
C3ZYW7_BRAFL	C3XYM7_BRAFL	C3ZYW7	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.543