(14 nodes) Golgi to vacuole transport network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YVW2_BRAFL	Uncharacterized protein. (603 aa)
	C3Z5P8_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (196 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3YAV7_BRAFL	VPS10 domain-containing protein. (246 aa)
	C3Y4K0_BRAFL	Uncharacterized protein. (727 aa)
	C3XZI6_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	C3XTT3_BRAFL	AP-1 complex subunit gamma. (846 aa)
	C4A0I4_BRAFL	Battenin. (336 aa)
	C3ZQD2_BRAFL	Uncharacterized protein. (3096 aa)
	C3ZQC9_BRAFL	Uncharacterized protein. (215 aa)
	C3YNA7_BRAFL	Battenin. (404 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)
	C3YPL0_BRAFL	Uncharacterized protein. (519 aa)
	C3Z4A3_BRAFL	Uncharacterized protein. (469 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTT3_BRAFL	C3YAV7_BRAFL	C3XTT3	C3YAV7	AP-1 complex subunit gamma.	VPS10 domain-containing protein.	0.537
C3XTT3_BRAFL	C3YIE0_BRAFL	C3XTT3	C3YIE0	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.617
C3XZI6_BRAFL	C3Y4K0_BRAFL	C3XZI6	C3Y4K0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.697
C3XZI6_BRAFL	C3Z5P8_BRAFL	C3XZI6	C3Z5P8	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.954
C3XZI6_BRAFL	C3ZQC9_BRAFL	C3XZI6	C3ZQC9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.547
C3XZI6_BRAFL	C3ZQD2_BRAFL	C3XZI6	C3ZQD2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.547
C3Y4K0_BRAFL	C3XZI6_BRAFL	C3Y4K0	C3XZI6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.697
C3Y4K0_BRAFL	C3YPL0_BRAFL	C3Y4K0	C3YPL0	Uncharacterized protein.	Uncharacterized protein.	0.429
C3Y4K0_BRAFL	C3Z5P8_BRAFL	C3Y4K0	C3Z5P8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.801
C3Y4K0_BRAFL	C3ZQC9_BRAFL	C3Y4K0	C3ZQC9	Uncharacterized protein.	Uncharacterized protein.	0.998
C3Y4K0_BRAFL	C3ZQD2_BRAFL	C3Y4K0	C3ZQD2	Uncharacterized protein.	Uncharacterized protein.	0.972
C3YAV7_BRAFL	C3XTT3_BRAFL	C3YAV7	C3XTT3	VPS10 domain-containing protein.	AP-1 complex subunit gamma.	0.537
C3YIE0_BRAFL	C3XTT3_BRAFL	C3YIE0	C3XTT3	Adaptin_N domain-containing protein.	AP-1 complex subunit gamma.	0.617
C3YPL0_BRAFL	C3Y4K0_BRAFL	C3YPL0	C3Y4K0	Uncharacterized protein.	Uncharacterized protein.	0.429
C3YPL0_BRAFL	C3YVW2_BRAFL	C3YPL0	C3YVW2	Uncharacterized protein.	Uncharacterized protein.	0.900
C3YVW2_BRAFL	C3YPL0_BRAFL	C3YVW2	C3YPL0	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Z5P8_BRAFL	C3XZI6_BRAFL	C3Z5P8	C3XZI6	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.954
C3Z5P8_BRAFL	C3Y4K0_BRAFL	C3Z5P8	C3Y4K0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.801
C3Z5P8_BRAFL	C3ZQC9_BRAFL	C3Z5P8	C3ZQC9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.718
C3Z5P8_BRAFL	C3ZQD2_BRAFL	C3Z5P8	C3ZQD2	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.547