(50 nodes) Endoplasmic reticulum organization network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YDQ9_BRAFL	L-type lectin-like domain-containing protein. (519 aa)
	C3YFL5_BRAFL	ER membrane protein complex subunit 4; Belongs to the EMC4 family. (174 aa)
	C3YHG5_BRAFL	Uncharacterized protein. (402 aa)
	C3YIZ8_BRAFL	Protein kinase domain-containing protein. (1015 aa)
	C3YL72_BRAFL	WD_REPEATS_REGION domain-containing protein. (1113 aa)
	C3YMS9_BRAFL	TLC domain-containing protein. (391 aa)
	C3YU03_BRAFL	Protein transport protein sec16. (2645 aa)
	C3YX77_BRAFL	Uncharacterized protein. (165 aa)
	C3YZN2_BRAFL	Uncharacterized protein. (708 aa)
	C3Z345_BRAFL	Receptor expression-enhancing protein. (200 aa)
	C3Z3R5_BRAFL	Pecanex_C domain-containing protein. (973 aa)
	C3Z3X4_BRAFL	GB1/RHD3-type G domain-containing protein. (378 aa)
	C3Z4R3_BRAFL	Uncharacterized protein. (272 aa)
	C3Z8X7_BRAFL	L-type lectin-like domain-containing protein. (171 aa)
	C3Z9G3_BRAFL	Ubiquitin-like domain-containing protein. (1268 aa)
	C3Z9S9_BRAFL	Ubiquitin-like domain-containing protein. (153 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZBN0_BRAFL	MPN domain-containing protein. (200 aa)
	C3ZCP4_BRAFL	Uncharacterized protein. (185 aa)
	C3ZIE7_BRAFL	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (470 aa)
	C3ZJ18_BRAFL	Uncharacterized protein. (58 aa)
	C3ZJ21_BRAFL	Uncharacterized protein. (57 aa)
	C3ZJ23_BRAFL	Uncharacterized protein. (105 aa)
	C3ZJ26_BRAFL	Uncharacterized protein. (57 aa)
	C3ZJ28_BRAFL	Uncharacterized protein. (105 aa)
	C3ZLJ9_BRAFL	Uncharacterized protein. (139 aa)
	C3ZM04_BRAFL	Uncharacterized protein. (322 aa)
	C3ZSH4_BRAFL	GB1/RHD3-type G domain-containing protein. (107 aa)
	C3ZSH6_BRAFL	GB1/RHD3-type G domain-containing protein. (159 aa)
	C3ZX83_BRAFL	Uncharacterized protein. (452 aa)
	C3ZZ30_BRAFL	Receptor expression-enhancing protein. (135 aa)
	C3XS56_BRAFL	SMP-LTD domain-containing protein. (436 aa)
	C3XTC1_BRAFL	Zinc_ribbon_10 domain-containing protein. (319 aa)
	C3XVK2_BRAFL	GOLD domain-containing protein. (203 aa)
	C3XXD4_BRAFL	Uncharacterized protein. (231 aa)
	C3XYE8_BRAFL	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (450 aa)
	C3XZ45_BRAFL	Pecanex_C domain-containing protein. (1093 aa)
	C3XZ46_BRAFL	Uncharacterized protein. (112 aa)
	C3Y160_BRAFL	OTU domain-containing protein. (1095 aa)
	C3Y3S0_BRAFL	Uncharacterized protein. (586 aa)
	C3Y3S1_BRAFL	Uncharacterized protein. (567 aa)
	C3Y3S2_BRAFL	Uncharacterized protein. (610 aa)
	C3Y3X0_BRAFL	Uncharacterized protein. (113 aa)
	C3Y8E8_BRAFL	TPR_REGION domain-containing protein. (291 aa)
	C3Y925_BRAFL	Uncharacterized protein. (300 aa)
	C3YAF4_BRAFL	EMC1_C domain-containing protein. (940 aa)
	C3YB11_BRAFL	ER membrane protein complex subunit 3. (259 aa)
	C3YCC5_BRAFL	Arsenical pump-driving ATPase; Belongs to the arsA ATPase family. (333 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTC1_BRAFL	C3ZZ30_BRAFL	C3XTC1	C3ZZ30	Zinc_ribbon_10 domain-containing protein.	Receptor expression-enhancing protein.	0.537
C3XVK2_BRAFL	C3YDQ9_BRAFL	C3XVK2	C3YDQ9	GOLD domain-containing protein.	L-type lectin-like domain-containing protein.	0.844
C3XVK2_BRAFL	C3YL72_BRAFL	C3XVK2	C3YL72	GOLD domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.731
C3XVK2_BRAFL	C3YU03_BRAFL	C3XVK2	C3YU03	GOLD domain-containing protein.	Protein transport protein sec16.	0.677
C3XVK2_BRAFL	C3Z8X7_BRAFL	C3XVK2	C3Z8X7	GOLD domain-containing protein.	L-type lectin-like domain-containing protein.	0.751
C3Y3X0_BRAFL	C3Y8E8_BRAFL	C3Y3X0	C3Y8E8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.998
C3Y3X0_BRAFL	C3YAF4_BRAFL	C3Y3X0	C3YAF4	Uncharacterized protein.	EMC1_C domain-containing protein.	0.987
C3Y3X0_BRAFL	C3YB11_BRAFL	C3Y3X0	C3YB11	Uncharacterized protein.	ER membrane protein complex subunit 3.	0.996
C3Y3X0_BRAFL	C3YCC5_BRAFL	C3Y3X0	C3YCC5	Uncharacterized protein.	Arsenical pump-driving ATPase; Belongs to the arsA ATPase family.	0.546
C3Y3X0_BRAFL	C3YFL5_BRAFL	C3Y3X0	C3YFL5	Uncharacterized protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.991
C3Y3X0_BRAFL	C3YX77_BRAFL	C3Y3X0	C3YX77	Uncharacterized protein.	Uncharacterized protein.	0.528
C3Y3X0_BRAFL	C3ZBN0_BRAFL	C3Y3X0	C3ZBN0	Uncharacterized protein.	MPN domain-containing protein.	0.976
C3Y3X0_BRAFL	C3ZM04_BRAFL	C3Y3X0	C3ZM04	Uncharacterized protein.	Uncharacterized protein.	0.971
C3Y8E8_BRAFL	C3Y3X0_BRAFL	C3Y8E8	C3Y3X0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.998
C3Y8E8_BRAFL	C3YAF4_BRAFL	C3Y8E8	C3YAF4	TPR_REGION domain-containing protein.	EMC1_C domain-containing protein.	0.998
C3Y8E8_BRAFL	C3YB11_BRAFL	C3Y8E8	C3YB11	TPR_REGION domain-containing protein.	ER membrane protein complex subunit 3.	0.998
C3Y8E8_BRAFL	C3YFL5_BRAFL	C3Y8E8	C3YFL5	TPR_REGION domain-containing protein.	ER membrane protein complex subunit 4; Belongs to the EMC4 family.	0.998
C3Y8E8_BRAFL	C3ZBN0_BRAFL	C3Y8E8	C3ZBN0	TPR_REGION domain-containing protein.	MPN domain-containing protein.	0.980
C3Y8E8_BRAFL	C3ZM04_BRAFL	C3Y8E8	C3ZM04	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.983
C3Y8E8_BRAFL	C3ZX83_BRAFL	C3Y8E8	C3ZX83	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.412