(31 nodes) Transcription elongation factor complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YCV2_BRAFL	Ubiquitin-like domain-containing protein. (118 aa)
	C3YDJ1_BRAFL	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
	C3YDW0_BRAFL	Uncharacterized protein. (951 aa)
	C3YDW7_BRAFL	Uncharacterized protein. (946 aa)
	C3YGG0_BRAFL	Uncharacterized protein. (1356 aa)
	C3XSK0_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (257 aa)
	C3Y1V7_BRAFL	Uncharacterized protein. (144 aa)
	C3YGG3_BRAFL	Uncharacterized protein. (582 aa)
	C3YJZ2_BRAFL	NUFIP1 domain-containing protein. (408 aa)
	C3YLD4_BRAFL	Uncharacterized protein. (1003 aa)
	C3YLT3_BRAFL	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (82 aa)
	C3YQ08_BRAFL	Uncharacterized protein. (400 aa)
	C3YMZ1_BRAFL	RING-type domain-containing protein. (361 aa)
	C3Y2N3_BRAFL	Uncharacterized protein. (585 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3YA64_BRAFL	Uncharacterized protein. (352 aa)
	C3YQ98_BRAFL	Uncharacterized protein. (614 aa)
	C3YW63_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
	C3Z313_BRAFL	HDAg domain-containing protein. (459 aa)
	C3Z3T8_BRAFL	Uncharacterized protein; Belongs to the cyclin family. (751 aa)
	C3Z3Y2_BRAFL	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (710 aa)
	C3Z4E3_BRAFL	WD_REPEATS_REGION domain-containing protein. (274 aa)
	C3Z6M7_BRAFL	HHH_7 domain-containing protein. (944 aa)
	C3Z749_BRAFL	Uncharacterized protein. (1464 aa)
	C3Z8A2_BRAFL	RB_A domain-containing protein. (305 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZQG2_BRAFL	Plus3 domain-containing protein. (605 aa)
	C3ZQP1_BRAFL	Uncharacterized protein. (180 aa)
	C3YC02_BRAFL	EAF domain-containing protein. (256 aa)
	C3YC22_BRAFL	NARG2_C domain-containing protein. (992 aa)
	C3YD45_BRAFL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSK0_BRAFL	C3Y1V7_BRAFL	C3XSK0	C3Y1V7	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.892
C3XSK0_BRAFL	C3Y2N3_BRAFL	C3XSK0	C3Y2N3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.866
C3XSK0_BRAFL	C3Y529_BRAFL	C3XSK0	C3Y529	CYCLIN domain-containing protein; Belongs to the cyclin family.	TPR_REGION domain-containing protein.	0.639
C3XSK0_BRAFL	C3YA64_BRAFL	C3XSK0	C3YA64	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.614
C3XSK0_BRAFL	C3YC02_BRAFL	C3XSK0	C3YC02	CYCLIN domain-containing protein; Belongs to the cyclin family.	EAF domain-containing protein.	0.864
C3XSK0_BRAFL	C3YCV2_BRAFL	C3XSK0	C3YCV2	CYCLIN domain-containing protein; Belongs to the cyclin family.	Ubiquitin-like domain-containing protein.	0.858
C3XSK0_BRAFL	C3YD45_BRAFL	C3XSK0	C3YD45	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.621
C3XSK0_BRAFL	C3YDJ1_BRAFL	C3XSK0	C3YDJ1	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.923
C3XSK0_BRAFL	C3YDW0_BRAFL	C3XSK0	C3YDW0	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.893
C3XSK0_BRAFL	C3YDW7_BRAFL	C3XSK0	C3YDW7	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.893
C3XSK0_BRAFL	C3YGG3_BRAFL	C3XSK0	C3YGG3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.832
C3XSK0_BRAFL	C3YLD4_BRAFL	C3XSK0	C3YLD4	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.836
C3XSK0_BRAFL	C3YLT3_BRAFL	C3XSK0	C3YLT3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.545
C3XSK0_BRAFL	C3YQ08_BRAFL	C3XSK0	C3YQ08	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.548
C3XSK0_BRAFL	C3YQ98_BRAFL	C3XSK0	C3YQ98	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.946
C3XSK0_BRAFL	C3YW63_BRAFL	C3XSK0	C3YW63	CYCLIN domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.989
C3XSK0_BRAFL	C3Z313_BRAFL	C3XSK0	C3Z313	CYCLIN domain-containing protein; Belongs to the cyclin family.	HDAg domain-containing protein.	0.843
C3XSK0_BRAFL	C3Z3T8_BRAFL	C3XSK0	C3Z3T8	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.904
C3XSK0_BRAFL	C3Z3Y2_BRAFL	C3XSK0	C3Z3Y2	CYCLIN domain-containing protein; Belongs to the cyclin family.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.855
C3XSK0_BRAFL	C3Z4E3_BRAFL	C3XSK0	C3Z4E3	CYCLIN domain-containing protein; Belongs to the cyclin family.	WD_REPEATS_REGION domain-containing protein.	0.565