(30 nodes) Aspartate family amino acid catabolic process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZL61_BRAFL	PALP domain-containing protein. (128 aa)
	C3ZL74_BRAFL	Uncharacterized protein. (203 aa)
	C3ZUH8_BRAFL	Epimerase domain-containing protein. (825 aa)
	C3ZZD4_BRAFL	Epimerase domain-containing protein. (334 aa)
	C3ZZL9_BRAFL	Aspartate aminotransferase. (387 aa)
	C4A016_BRAFL	Epimerase domain-containing protein. (264 aa)
	C3YDB6_BRAFL	DAO domain-containing protein. (234 aa)
	C3YDB7_BRAFL	DAO domain-containing protein. (394 aa)
	C3YIV5_BRAFL	Aminotran_1_2 domain-containing protein. (412 aa)
	C3YJJ0_BRAFL	Uncharacterized protein. (411 aa)
	C3YMM5_BRAFL	PALP domain-containing protein. (326 aa)
	C3YNF4_BRAFL	Uncharacterized protein. (329 aa)
	C3YNP8_BRAFL	DAO domain-containing protein. (800 aa)
	C3YNP9_BRAFL	DAO domain-containing protein. (416 aa)
	C3YNX0_BRAFL	Uncharacterized protein. (328 aa)
	C3YPZ5_BRAFL	PALP domain-containing protein. (113 aa)
	C3YTP2_BRAFL	DAO domain-containing protein. (388 aa)
	C3YVL4_BRAFL	PALP domain-containing protein. (327 aa)
	C3YWW0_BRAFL	Aminotran_1_2 domain-containing protein. (394 aa)
	C3YZI1_BRAFL	Aminotran_1_2 domain-containing protein. (214 aa)
	C3ZB43_BRAFL	DAO domain-containing protein. (345 aa)
	C3ZBP9_BRAFL	Beta_elim_lyase domain-containing protein. (360 aa)
	C3ZCP5_BRAFL	Uncharacterized protein. (373 aa)
	C3XVP5_BRAFL	DAO domain-containing protein. (387 aa)
	C3XWI3_BRAFL	Aminotran_1_2 domain-containing protein. (195 aa)
	C3ZFX2_BRAFL	AlaDh_PNT_C domain-containing protein. (349 aa)
	C3ZI16_BRAFL	Uncharacterized protein. (312 aa)
	C3Y320_BRAFL	Uncharacterized protein. (512 aa)
	C3Y9T1_BRAFL	PALP domain-containing protein. (451 aa)
	C3YBQ9_BRAFL	HIT domain-containing protein. (293 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVP5_BRAFL	C3YDB6_BRAFL	C3XVP5	C3YDB6	DAO domain-containing protein.	DAO domain-containing protein.	0.902
C3XVP5_BRAFL	C3YWW0_BRAFL	C3XVP5	C3YWW0	DAO domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.914
C3XVP5_BRAFL	C3ZBP9_BRAFL	C3XVP5	C3ZBP9	DAO domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.924
C3Y9T1_BRAFL	C3ZBP9_BRAFL	C3Y9T1	C3ZBP9	PALP domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.943
C3Y9T1_BRAFL	C3ZL74_BRAFL	C3Y9T1	C3ZL74	PALP domain-containing protein.	Uncharacterized protein.	0.902
C3Y9T1_BRAFL	C3ZUH8_BRAFL	C3Y9T1	C3ZUH8	PALP domain-containing protein.	Epimerase domain-containing protein.	0.911
C3Y9T1_BRAFL	C3ZZD4_BRAFL	C3Y9T1	C3ZZD4	PALP domain-containing protein.	Epimerase domain-containing protein.	0.911
C3YDB6_BRAFL	C3XVP5_BRAFL	C3YDB6	C3XVP5	DAO domain-containing protein.	DAO domain-containing protein.	0.902
C3YDB6_BRAFL	C3YWW0_BRAFL	C3YDB6	C3YWW0	DAO domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.914
C3YDB6_BRAFL	C3ZBP9_BRAFL	C3YDB6	C3ZBP9	DAO domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.924
C3YIV5_BRAFL	C3YWW0_BRAFL	C3YIV5	C3YWW0	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.457
C3YIV5_BRAFL	C3ZI16_BRAFL	C3YIV5	C3ZI16	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.918
C3YIV5_BRAFL	C3ZZL9_BRAFL	C3YIV5	C3ZZL9	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.980
C3YJJ0_BRAFL	C3YNF4_BRAFL	C3YJJ0	C3YNF4	Uncharacterized protein.	Uncharacterized protein.	0.947
C3YJJ0_BRAFL	C3YNX0_BRAFL	C3YJJ0	C3YNX0	Uncharacterized protein.	Uncharacterized protein.	0.947
C3YMM5_BRAFL	C3ZBP9_BRAFL	C3YMM5	C3ZBP9	PALP domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.458
C3YNF4_BRAFL	C3YJJ0_BRAFL	C3YNF4	C3YJJ0	Uncharacterized protein.	Uncharacterized protein.	0.947
C3YNF4_BRAFL	C3ZFX2_BRAFL	C3YNF4	C3ZFX2	Uncharacterized protein.	AlaDh_PNT_C domain-containing protein.	0.940
C3YNX0_BRAFL	C3YJJ0_BRAFL	C3YNX0	C3YJJ0	Uncharacterized protein.	Uncharacterized protein.	0.947
C3YNX0_BRAFL	C3ZFX2_BRAFL	C3YNX0	C3ZFX2	Uncharacterized protein.	AlaDh_PNT_C domain-containing protein.	0.940