(30 nodes) Ribonucleotide catabolic process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZNS5_BRAFL	Uncharacterized protein. (424 aa)
	C3XQ86_BRAFL	Phosphodiesterase. (529 aa)
	C3XSP8_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (456 aa)
	C3XUM5_BRAFL	Uncharacterized protein. (329 aa)
	C3XY60_BRAFL	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family. (393 aa)
	C3XY61_BRAFL	PDE4_UCR domain-containing protein. (158 aa)
	C3Y0X9_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (570 aa)
	C3Y1F5_BRAFL	Nudix hydrolase domain-containing protein. (156 aa)
	C3Y2Y0_BRAFL	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (332 aa)
	C3Y3U8_BRAFL	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (100 aa)
	C3Y3U9_BRAFL	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (373 aa)
	C3YCJ1_BRAFL	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family. (1044 aa)
	C3YCN3_BRAFL	Nudix hydrolase domain-containing protein. (673 aa)
	C3YDR7_BRAFL	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (404 aa)
	C3YHC9_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (588 aa)
	C3YMS5_BRAFL	Nudix hydrolase domain-containing protein. (227 aa)
	C3YMW1_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (508 aa)
	C3YQ33_BRAFL	Phosphodiesterase. (741 aa)
	C3YRI7_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (515 aa)
	C3YY08_BRAFL	Uncharacterized protein. (99 aa)
	C3Z8U1_BRAFL	Uncharacterized protein; Belongs to the 5'-nucleotidase family. (513 aa)
	C3Z990_BRAFL	CN hydrolase domain-containing protein. (384 aa)
	C3ZAV4_BRAFL	Uncharacterized protein. (315 aa)
	C3ZAV5_BRAFL	Uncharacterized protein. (297 aa)
	C3ZBL8_BRAFL	Nudix hydrolase domain-containing protein. (279 aa)
	C3ZGM9_BRAFL	Uncharacterized protein. (146 aa)
	C3ZI85_BRAFL	Nudix hydrolase domain-containing protein. (193 aa)
	C3ZIX2_BRAFL	Nudix hydrolase domain-containing protein. (322 aa)
	C3ZS98_BRAFL	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family. (265 aa)
	C4A0J6_BRAFL	Uncharacterized protein. (111 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ86_BRAFL	C3XSP8_BRAFL	C3XQ86	C3XSP8	Phosphodiesterase.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XQ86_BRAFL	C3XY61_BRAFL	C3XQ86	C3XY61	Phosphodiesterase.	PDE4_UCR domain-containing protein.	0.688
C3XQ86_BRAFL	C3Y3U8_BRAFL	C3XQ86	C3Y3U8	Phosphodiesterase.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.900
C3XQ86_BRAFL	C3YHC9_BRAFL	C3XQ86	C3YHC9	Phosphodiesterase.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XQ86_BRAFL	C3YMW1_BRAFL	C3XQ86	C3YMW1	Phosphodiesterase.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XQ86_BRAFL	C3YRI7_BRAFL	C3XQ86	C3YRI7	Phosphodiesterase.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XQ86_BRAFL	C3Z8U1_BRAFL	C3XQ86	C3Z8U1	Phosphodiesterase.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XQ86_BRAFL	C3ZGM9_BRAFL	C3XQ86	C3ZGM9	Phosphodiesterase.	Uncharacterized protein.	0.512
C3XSP8_BRAFL	C3XQ86_BRAFL	C3XSP8	C3XQ86	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Phosphodiesterase.	0.670
C3XSP8_BRAFL	C3XY60_BRAFL	C3XSP8	C3XY60	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	0.670
C3XSP8_BRAFL	C3Y3U8_BRAFL	C3XSP8	C3Y3U8	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.914
C3XSP8_BRAFL	C3ZGM9_BRAFL	C3XSP8	C3ZGM9	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	Uncharacterized protein.	0.650
C3XY60_BRAFL	C3XSP8_BRAFL	C3XY60	C3XSP8	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XY60_BRAFL	C3XY61_BRAFL	C3XY60	C3XY61	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	PDE4_UCR domain-containing protein.	0.900
C3XY60_BRAFL	C3YHC9_BRAFL	C3XY60	C3YHC9	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XY60_BRAFL	C3YMW1_BRAFL	C3XY60	C3YMW1	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XY60_BRAFL	C3YRI7_BRAFL	C3XY60	C3YRI7	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XY60_BRAFL	C3Z8U1_BRAFL	C3XY60	C3Z8U1	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.670
C3XY60_BRAFL	C3ZGM9_BRAFL	C3XY60	C3ZGM9	PDEase domain-containing protein; Belongs to the cyclic nucleotide phosphodiesterase family.	Uncharacterized protein.	0.990
C3XY61_BRAFL	C3XQ86_BRAFL	C3XY61	C3XQ86	PDE4_UCR domain-containing protein.	Phosphodiesterase.	0.688