(16 nodes) Response to gamma radiation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YNI7_BRAFL	Uncharacterized protein. (1175 aa)
	C3Y235_BRAFL	BHLH domain-containing protein. (369 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3ZZH4_BRAFL	Uncharacterized protein. (541 aa)
	C3ZV28_BRAFL	Uncharacterized protein. (383 aa)
	C3ZSM7_BRAFL	Ku domain-containing protein. (716 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)
	C3ZLH8_BRAFL	Probable lysine-specific histone demethylase 1; Probable histone demethylase that specifically demethylates 'Lys-4' of histone H3, a specific tag for epigenetic transcriptional activation, thereby acting as a corepressor. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Demethylates both mono- and di-methylated 'Lys-4' of histone H3. (804 aa)
	C3ZKP7_BRAFL	Uncharacterized protein. (612 aa)
	C3Z9X0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2531 aa)
	C3Z749_BRAFL	Uncharacterized protein. (1464 aa)
	C3Z3A4_BRAFL	Uncharacterized protein. (676 aa)
	C3Z1F8_BRAFL	Ku domain-containing protein. (613 aa)
	C3YZ01_BRAFL	DNA ligase. (793 aa)
	C3YX63_BRAFL	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (354 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YH71_BRAFL	C3YH73_BRAFL	C3YH71	C3YH73	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.948
C3YH71_BRAFL	C3YNI7_BRAFL	C3YH71	C3YNI7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.513
C3YH71_BRAFL	C3YZ01_BRAFL	C3YH71	C3YZ01	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA ligase.	0.528
C3YH71_BRAFL	C3Z1F8_BRAFL	C3YH71	C3Z1F8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Ku domain-containing protein.	0.832
C3YH71_BRAFL	C3Z9X0_BRAFL	C3YH71	C3Z9X0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.967
C3YH71_BRAFL	C3ZSM7_BRAFL	C3YH71	C3ZSM7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Ku domain-containing protein.	0.818
C3YH71_BRAFL	C3ZV28_BRAFL	C3YH71	C3ZV28	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.875
C3YH71_BRAFL	C3ZZH4_BRAFL	C3YH71	C3ZZH4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.972
C3YH73_BRAFL	C3YH71_BRAFL	C3YH73	C3YH71	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.948
C3YH73_BRAFL	C3YNI7_BRAFL	C3YH73	C3YNI7	FAT domain-containing protein.	Uncharacterized protein.	0.513
C3YH73_BRAFL	C3YZ01_BRAFL	C3YH73	C3YZ01	FAT domain-containing protein.	DNA ligase.	0.528
C3YH73_BRAFL	C3Z1F8_BRAFL	C3YH73	C3Z1F8	FAT domain-containing protein.	Ku domain-containing protein.	0.832
C3YH73_BRAFL	C3Z9X0_BRAFL	C3YH73	C3Z9X0	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.967
C3YH73_BRAFL	C3ZSM7_BRAFL	C3YH73	C3ZSM7	FAT domain-containing protein.	Ku domain-containing protein.	0.818
C3YH73_BRAFL	C3ZV28_BRAFL	C3YH73	C3ZV28	FAT domain-containing protein.	Uncharacterized protein.	0.875
C3YH73_BRAFL	C3ZZH4_BRAFL	C3YH73	C3ZZH4	FAT domain-containing protein.	Uncharacterized protein.	0.972
C3YNI7_BRAFL	C3YH71_BRAFL	C3YNI7	C3YH71	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.513
C3YNI7_BRAFL	C3YH73_BRAFL	C3YNI7	C3YH73	Uncharacterized protein.	FAT domain-containing protein.	0.513
C3YNI7_BRAFL	C3YZ01_BRAFL	C3YNI7	C3YZ01	Uncharacterized protein.	DNA ligase.	0.595
C3YNI7_BRAFL	C3Z1F8_BRAFL	C3YNI7	C3Z1F8	Uncharacterized protein.	Ku domain-containing protein.	0.570