(5 nodes) AMP binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z4P7_BRAFL	Pribosyltran domain-containing protein. (185 aa)
	C3YIV4_BRAFL	Pribosyltran domain-containing protein. (198 aa)
	C3XUB4_BRAFL	Pribosyltran domain-containing protein. (183 aa)
	C3ZTM2_BRAFL	Nuclear receptor domain-containing protein. (1232 aa)
	C3YBW1_BRAFL	Uncharacterized protein. (304 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XUB4_BRAFL	C3YBW1_BRAFL	C3XUB4	C3YBW1	Pribosyltran domain-containing protein.	Uncharacterized protein.	0.428
C3XUB4_BRAFL	C3Z4P7_BRAFL	C3XUB4	C3Z4P7	Pribosyltran domain-containing protein.	Pribosyltran domain-containing protein.	0.901
C3YBW1_BRAFL	C3XUB4_BRAFL	C3YBW1	C3XUB4	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.428
C3YBW1_BRAFL	C3YIV4_BRAFL	C3YBW1	C3YIV4	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.428
C3YBW1_BRAFL	C3Z4P7_BRAFL	C3YBW1	C3Z4P7	Uncharacterized protein.	Pribosyltran domain-containing protein.	0.428
C3YIV4_BRAFL	C3YBW1_BRAFL	C3YIV4	C3YBW1	Pribosyltran domain-containing protein.	Uncharacterized protein.	0.428
C3Z4P7_BRAFL	C3XUB4_BRAFL	C3Z4P7	C3XUB4	Pribosyltran domain-containing protein.	Pribosyltran domain-containing protein.	0.901
C3Z4P7_BRAFL	C3YBW1_BRAFL	C3Z4P7	C3YBW1	Pribosyltran domain-containing protein.	Uncharacterized protein.	0.428