(28 nodes) Inclusion body network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQC2_BRAFL	PI31_Prot_N domain-containing protein. (636 aa)
	C3XVY8_BRAFL	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (414 aa)
	C3XWA2_BRAFL	Peptidase S59 domain-containing protein. (1834 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3XYA9_BRAFL	Uncharacterized protein. (440 aa)
	C3XZE7_BRAFL	Urb2 domain-containing protein. (1154 aa)
	C3Y1B7_BRAFL	Uncharacterized protein. (1507 aa)
	C3Y5K6_BRAFL	DNA polymerase. (1286 aa)
	C3YDF6_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3YFG1_BRAFL	FHA domain-containing protein. (721 aa)
	C3YID9_BRAFL	Uncharacterized protein. (1932 aa)
	C3YLR5_BRAFL	Uncharacterized protein. (451 aa)
	C3YV77_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (570 aa)
	C3YVM0_BRAFL	SAP domain-containing protein. (299 aa)
	C3YXY3_BRAFL	Uncharacterized protein. (377 aa)
	C3Z502_BRAFL	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (434 aa)
	C3Z9P1_BRAFL	RING-type domain-containing protein. (316 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZEZ0_BRAFL	RanBD1 domain-containing protein. (490 aa)
	C3ZEZ4_BRAFL	Uncharacterized protein. (3724 aa)
	C3ZGJ8_BRAFL	Uncharacterized protein. (363 aa)
	C3ZGJ9_BRAFL	Uncharacterized protein. (3187 aa)
	C3ZGQ7_BRAFL	RBR-type E3 ubiquitin transferase. (486 aa)
	C3ZQV8_BRAFL	RanBD1 domain-containing protein. (130 aa)
	C3ZRY1_BRAFL	Uncharacterized protein. (169 aa)
	C3ZRY3_BRAFL	BACK domain-containing protein. (348 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVY8_BRAFL	C3XXF8_BRAFL	C3XVY8	C3XXF8	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Uncharacterized protein.	0.803
C3XWA2_BRAFL	C3Y1B7_BRAFL	C3XWA2	C3Y1B7	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.955
C3XWA2_BRAFL	C3ZEZ0_BRAFL	C3XWA2	C3ZEZ0	Peptidase S59 domain-containing protein.	RanBD1 domain-containing protein.	0.972
C3XWA2_BRAFL	C3ZEZ4_BRAFL	C3XWA2	C3ZEZ4	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.972
C3XWA2_BRAFL	C3ZQV8_BRAFL	C3XWA2	C3ZQV8	Peptidase S59 domain-containing protein.	RanBD1 domain-containing protein.	0.972
C3XXF8_BRAFL	C3XVY8_BRAFL	C3XXF8	C3XVY8	Uncharacterized protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.803
C3XXF8_BRAFL	C3Z502_BRAFL	C3XXF8	C3Z502	Uncharacterized protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.803
C3XXF8_BRAFL	C3ZGJ8_BRAFL	C3XXF8	C3ZGJ8	Uncharacterized protein.	Uncharacterized protein.	0.531
C3XXF8_BRAFL	C3ZGJ9_BRAFL	C3XXF8	C3ZGJ9	Uncharacterized protein.	Uncharacterized protein.	0.531
C3Y1B7_BRAFL	C3XWA2_BRAFL	C3Y1B7	C3XWA2	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.955
C3Y1B7_BRAFL	C3ZEZ0_BRAFL	C3Y1B7	C3ZEZ0	Uncharacterized protein.	RanBD1 domain-containing protein.	0.986
C3Y1B7_BRAFL	C3ZEZ4_BRAFL	C3Y1B7	C3ZEZ4	Uncharacterized protein.	Uncharacterized protein.	0.986
C3Y1B7_BRAFL	C3ZQV8_BRAFL	C3Y1B7	C3ZQV8	Uncharacterized protein.	RanBD1 domain-containing protein.	0.986
C3Y5K6_BRAFL	C3YFG1_BRAFL	C3Y5K6	C3YFG1	DNA polymerase.	FHA domain-containing protein.	0.435
C3Y5K6_BRAFL	C3YLR5_BRAFL	C3Y5K6	C3YLR5	DNA polymerase.	Uncharacterized protein.	0.708
C3Y5K6_BRAFL	C3YVM0_BRAFL	C3Y5K6	C3YVM0	DNA polymerase.	SAP domain-containing protein.	0.708
C3YDF6_BRAFL	C3YFG1_BRAFL	C3YDF6	C3YFG1	ANK_REP_REGION domain-containing protein.	FHA domain-containing protein.	0.872
C3YDF6_BRAFL	C3YLR5_BRAFL	C3YDF6	C3YLR5	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.546
C3YDF6_BRAFL	C3YVM0_BRAFL	C3YDF6	C3YVM0	ANK_REP_REGION domain-containing protein.	SAP domain-containing protein.	0.546
C3YFG1_BRAFL	C3Y5K6_BRAFL	C3YFG1	C3Y5K6	FHA domain-containing protein.	DNA polymerase.	0.435