(5 nodes) NuRD complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YID2_BRAFL	WD_REPEATS_REGION domain-containing protein. (187 aa)
	C3Y091_BRAFL	Uncharacterized protein. (706 aa)
	C3Y1G6_BRAFL	P66_CC domain-containing protein. (484 aa)
	C3YRK8_BRAFL	Uncharacterized protein. (964 aa)
	C4A021_BRAFL	WD_REPEATS_REGION domain-containing protein. (429 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y091_BRAFL	C3Y1G6_BRAFL	C3Y091	C3Y1G6	Uncharacterized protein.	P66_CC domain-containing protein.	0.963
C3Y091_BRAFL	C3YID2_BRAFL	C3Y091	C3YID2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.985
C3Y091_BRAFL	C3YRK8_BRAFL	C3Y091	C3YRK8	Uncharacterized protein.	Uncharacterized protein.	0.913
C3Y091_BRAFL	C4A021_BRAFL	C3Y091	C4A021	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.985
C3Y1G6_BRAFL	C3Y091_BRAFL	C3Y1G6	C3Y091	P66_CC domain-containing protein.	Uncharacterized protein.	0.963
C3Y1G6_BRAFL	C3YID2_BRAFL	C3Y1G6	C3YID2	P66_CC domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.931
C3Y1G6_BRAFL	C3YRK8_BRAFL	C3Y1G6	C3YRK8	P66_CC domain-containing protein.	Uncharacterized protein.	0.910
C3Y1G6_BRAFL	C4A021_BRAFL	C3Y1G6	C4A021	P66_CC domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.931
C3YID2_BRAFL	C3Y091_BRAFL	C3YID2	C3Y091	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.985
C3YID2_BRAFL	C3Y1G6_BRAFL	C3YID2	C3Y1G6	WD_REPEATS_REGION domain-containing protein.	P66_CC domain-containing protein.	0.931
C3YID2_BRAFL	C3YRK8_BRAFL	C3YID2	C3YRK8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.823
C3YID2_BRAFL	C4A021_BRAFL	C3YID2	C4A021	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.543
C3YRK8_BRAFL	C3Y091_BRAFL	C3YRK8	C3Y091	Uncharacterized protein.	Uncharacterized protein.	0.913
C3YRK8_BRAFL	C3Y1G6_BRAFL	C3YRK8	C3Y1G6	Uncharacterized protein.	P66_CC domain-containing protein.	0.910
C3YRK8_BRAFL	C3YID2_BRAFL	C3YRK8	C3YID2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.823
C3YRK8_BRAFL	C4A021_BRAFL	C3YRK8	C4A021	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.823
C4A021_BRAFL	C3Y091_BRAFL	C4A021	C3Y091	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.985
C4A021_BRAFL	C3Y1G6_BRAFL	C4A021	C3Y1G6	WD_REPEATS_REGION domain-containing protein.	P66_CC domain-containing protein.	0.931
C4A021_BRAFL	C3YID2_BRAFL	C4A021	C3YID2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.543
C4A021_BRAFL	C3YRK8_BRAFL	C4A021	C3YRK8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.823