(17 nodes) Virion assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZHY5_BRAFL	SAM domain-containing protein. (438 aa)
	C3ZPR0_BRAFL	Rab-GAP TBC domain-containing protein. (359 aa)
	C3ZUX5_BRAFL	UEV domain-containing protein. (143 aa)
	C3ZYE4_BRAFL	MIT domain-containing protein. (115 aa)
	C3Z6I8_BRAFL	UEV domain-containing protein. (112 aa)
	C3Z6I7_BRAFL	UEV domain-containing protein. (115 aa)
	C3Z4S2_BRAFL	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1142 aa)
	C3Z2C8_BRAFL	Uncharacterized protein. (204 aa)
	C3YXI8_BRAFL	Uncharacterized protein. (289 aa)
	C3YX16_BRAFL	Uncharacterized protein. (278 aa)
	C3YIV6_BRAFL	Uncharacterized protein. (222 aa)
	C3YG01_BRAFL	Uncharacterized protein. (371 aa)
	C3YEH0_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (440 aa)
	C3Y2Y1_BRAFL	Uncharacterized protein. (483 aa)
	C3Y134_BRAFL	BRO1 domain-containing protein. (874 aa)
	C3XU08_BRAFL	Rab-GAP TBC domain-containing protein. (404 aa)
	C3XTH3_BRAFL	Uncharacterized protein. (217 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTH3_BRAFL	C3Y134_BRAFL	C3XTH3	C3Y134	Uncharacterized protein.	BRO1 domain-containing protein.	0.485
C3XTH3_BRAFL	C3Y2Y1_BRAFL	C3XTH3	C3Y2Y1	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3YEH0_BRAFL	C3XTH3	C3YEH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.766
C3XTH3_BRAFL	C3YG01_BRAFL	C3XTH3	C3YG01	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3YIV6_BRAFL	C3XTH3	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XTH3_BRAFL	C3YX16_BRAFL	C3XTH3	C3YX16	Uncharacterized protein.	Uncharacterized protein.	0.610
C3XTH3_BRAFL	C3YXI8_BRAFL	C3XTH3	C3YXI8	Uncharacterized protein.	Uncharacterized protein.	0.610
C3XTH3_BRAFL	C3Z6I7_BRAFL	C3XTH3	C3Z6I7	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3Z6I8_BRAFL	C3XTH3	C3Z6I8	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3ZUX5_BRAFL	C3XTH3	C3ZUX5	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3ZYE4_BRAFL	C3XTH3	C3ZYE4	Uncharacterized protein.	MIT domain-containing protein.	0.766
C3XU08_BRAFL	C3Z2C8_BRAFL	C3XU08	C3Z2C8	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.971
C3Y134_BRAFL	C3XTH3_BRAFL	C3Y134	C3XTH3	BRO1 domain-containing protein.	Uncharacterized protein.	0.485
C3Y134_BRAFL	C3Y2Y1_BRAFL	C3Y134	C3Y2Y1	BRO1 domain-containing protein.	Uncharacterized protein.	0.590
C3Y134_BRAFL	C3YEH0_BRAFL	C3Y134	C3YEH0	BRO1 domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.721
C3Y134_BRAFL	C3YG01_BRAFL	C3Y134	C3YG01	BRO1 domain-containing protein.	Uncharacterized protein.	0.590
C3Y134_BRAFL	C3YIV6_BRAFL	C3Y134	C3YIV6	BRO1 domain-containing protein.	Uncharacterized protein.	0.485
C3Y134_BRAFL	C3YX16_BRAFL	C3Y134	C3YX16	BRO1 domain-containing protein.	Uncharacterized protein.	0.476
C3Y134_BRAFL	C3YXI8_BRAFL	C3Y134	C3YXI8	BRO1 domain-containing protein.	Uncharacterized protein.	0.476
C3Y134_BRAFL	C3Z6I7_BRAFL	C3Y134	C3Z6I7	BRO1 domain-containing protein.	UEV domain-containing protein.	0.590