(48 nodes) Syntaxin binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZW37_BRAFL	Uncharacterized protein. (373 aa)
	C3XQ82_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	C3XR60_BRAFL	Uncharacterized protein. (294 aa)
	C3XS03_BRAFL	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (210 aa)
	C3XS11_BRAFL	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (194 aa)
	C3XU80_BRAFL	Uncharacterized protein. (363 aa)
	C3XXM3_BRAFL	Pep3_Vps18 domain-containing protein. (986 aa)
	C3XY11_BRAFL	Uncharacterized protein. (846 aa)
	C3XZ31_BRAFL	Uncharacterized protein. (533 aa)
	C3Y1H1_BRAFL	C2 domain-containing protein. (138 aa)
	C3Y1H2_BRAFL	Uncharacterized protein. (1144 aa)
	C3Y2P5_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (287 aa)
	C3Y2U6_BRAFL	Uncharacterized protein. (282 aa)
	C3Y3Z5_BRAFL	Uncharacterized protein. (146 aa)
	C3Y434_BRAFL	Transmembrane emp24 domain-containing protein 9. (219 aa)
	C3Y4K0_BRAFL	Uncharacterized protein. (727 aa)
	C3Y6U6_BRAFL	MHD2 domain-containing protein. (1621 aa)
	C3Y938_BRAFL	Uncharacterized protein. (537 aa)
	C3YC85_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (217 aa)
	C3YCL6_BRAFL	TPR_REGION domain-containing protein. (323 aa)
	C3YFZ3_BRAFL	Uncharacterized protein. (272 aa)
	C3YH60_BRAFL	Uncharacterized protein. (238 aa)
	C3YKV1_BRAFL	RING-type domain-containing protein. (894 aa)
	C3YX66_BRAFL	Uncharacterized protein. (316 aa)
	C3YZ18_BRAFL	Uncharacterized protein. (780 aa)
	C3YZU1_BRAFL	Uncharacterized protein. (500 aa)
	C3Z4L7_BRAFL	C2 domain-containing protein. (129 aa)
	C3Z4L8_BRAFL	C2 domain-containing protein. (444 aa)
	C3Z6H6_BRAFL	Uncharacterized protein. (334 aa)
	C3Z6K0_BRAFL	Uncharacterized protein. (269 aa)
	C3Z6X5_BRAFL	Uncharacterized protein. (184 aa)
	C3Z977_BRAFL	C2 domain-containing protein. (143 aa)
	C3Z978_BRAFL	C2 domain-containing protein. (162 aa)
	C3Z9B7_BRAFL	Uncharacterized protein. (717 aa)
	C3ZXF0_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)
	C3ZA65_BRAFL	Uncharacterized protein. (677 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZAU4_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (318 aa)
	C3ZG74_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	C3ZGI7_BRAFL	Death domain-containing protein. (463 aa)
	C3ZW38_BRAFL	Uncharacterized protein. (225 aa)
	C3ZLI2_BRAFL	WD_REPEATS_REGION domain-containing protein. (1023 aa)
	C3ZP65_BRAFL	V-SNARE coiled-coil homology domain-containing protein. (114 aa)
	C3ZQC9_BRAFL	Uncharacterized protein. (215 aa)
	C3ZQD2_BRAFL	Uncharacterized protein. (3096 aa)
	C3ZRN9_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (864 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ82_BRAFL	C3XR60_BRAFL	C3XQ82	C3XR60	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.997
C3XQ82_BRAFL	C3XS03_BRAFL	C3XQ82	C3XS03	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.984
C3XQ82_BRAFL	C3XS11_BRAFL	C3XQ82	C3XS11	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.984
C3XQ82_BRAFL	C3XU80_BRAFL	C3XQ82	C3XU80	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.798
C3XQ82_BRAFL	C3Y1H1_BRAFL	C3XQ82	C3Y1H1	V-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.689
C3XQ82_BRAFL	C3Y1H2_BRAFL	C3XQ82	C3Y1H2	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.690
C3XQ82_BRAFL	C3Y3Z5_BRAFL	C3XQ82	C3Y3Z5	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.791
C3XQ82_BRAFL	C3Y4K0_BRAFL	C3XQ82	C3Y4K0	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.545
C3XQ82_BRAFL	C3Y6U6_BRAFL	C3XQ82	C3Y6U6	V-SNARE coiled-coil homology domain-containing protein.	MHD2 domain-containing protein.	0.508
C3XQ82_BRAFL	C3YC85_BRAFL	C3XQ82	C3YC85	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.944
C3XQ82_BRAFL	C3YCL6_BRAFL	C3XQ82	C3YCL6	V-SNARE coiled-coil homology domain-containing protein.	TPR_REGION domain-containing protein.	0.871
C3XQ82_BRAFL	C3YFZ3_BRAFL	C3XQ82	C3YFZ3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.421
C3XQ82_BRAFL	C3YH60_BRAFL	C3XQ82	C3YH60	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.876
C3XQ82_BRAFL	C3YZ18_BRAFL	C3XQ82	C3YZ18	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.945
C3XQ82_BRAFL	C3Z4L8_BRAFL	C3XQ82	C3Z4L8	V-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.781
C3XQ82_BRAFL	C3Z6H6_BRAFL	C3XQ82	C3Z6H6	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.798
C3XQ82_BRAFL	C3Z6K0_BRAFL	C3XQ82	C3Z6K0	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.649
C3XQ82_BRAFL	C3Z6X5_BRAFL	C3XQ82	C3Z6X5	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.702
C3XQ82_BRAFL	C3Z977_BRAFL	C3XQ82	C3Z977	V-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.433
C3XQ82_BRAFL	C3ZAU4_BRAFL	C3XQ82	C3ZAU4	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.944