(51 nodes) Ubiquitin-dependent ERAD pathway network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XUA6_BRAFL	Ufd2P_core domain-containing protein. (234 aa)
	C3XSN3_BRAFL	UBX domain-containing protein. (448 aa)
	C3XTS8_BRAFL	Uncharacterized protein. (708 aa)
	C3XZ44_BRAFL	Uncharacterized protein. (320 aa)
	C3XZY3_BRAFL	Uncharacterized protein. (367 aa)
	C3Y0B3_BRAFL	RING-type domain-containing protein. (548 aa)
	C3Y141_BRAFL	Uncharacterized protein. (753 aa)
	C3Y142_BRAFL	Uncharacterized protein. (199 aa)
	C3Y446_BRAFL	CUE domain-containing protein. (404 aa)
	C3Y9V6_BRAFL	Uncharacterized protein. (1047 aa)
	C3Y9V8_BRAFL	Uncharacterized protein. (658 aa)
	C3Y9W1_BRAFL	Calreticulin. (424 aa)
	C3YA24_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (778 aa)
	C3YAF2_BRAFL	OTU domain-containing protein. (315 aa)
	C3YCQ2_BRAFL	Uncharacterized protein. (288 aa)
	C3YD04_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (800 aa)
	C3YD25_BRAFL	RING-type domain-containing protein. (171 aa)
	C3YE16_BRAFL	Uncharacterized protein. (779 aa)
	C3YFB1_BRAFL	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (250 aa)
	C3YFB3_BRAFL	Uncharacterized protein. (630 aa)
	C3YG77_BRAFL	Uncharacterized protein. (832 aa)
	C3YJ41_BRAFL	RING-type domain-containing protein. (737 aa)
	C3YKP5_BRAFL	UBX domain-containing protein. (451 aa)
	C3YRG8_BRAFL	Uncharacterized protein. (627 aa)
	C3YRQ4_BRAFL	RING-type domain-containing protein. (319 aa)
	C3YSK2_BRAFL	ANK_REP_REGION domain-containing protein. (798 aa)
	C3YTH4_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (718 aa)
	C3YV77_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (570 aa)
	C3YVA2_BRAFL	RING-CH-type domain-containing protein. (219 aa)
	C3YZR4_BRAFL	Uncharacterized protein. (485 aa)
	C3Z2I5_BRAFL	Uncharacterized protein. (430 aa)
	C3Z2Q0_BRAFL	J domain-containing protein. (104 aa)
	C3Z3L5_BRAFL	AAA domain-containing protein; Belongs to the AAA ATPase family. (392 aa)
	C3Z3Y7_BRAFL	Uncharacterized protein. (241 aa)
	C3Z4B6_BRAFL	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (257 aa)
	C3Z4N3_BRAFL	Uncharacterized protein. (589 aa)
	C3Z5R6_BRAFL	Uncharacterized protein. (158 aa)
	C3Z5R8_BRAFL	Uncharacterized protein. (108 aa)
	Hx1	Uncharacterized protein. (672 aa)
	C3Z989_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (143 aa)
	C3Z9G3_BRAFL	Ubiquitin-like domain-containing protein. (1268 aa)
	C3Z9K6_BRAFL	PRKCSH domain-containing protein. (271 aa)
	C3Z9M0_BRAFL	Ubiquitin-like domain-containing protein. (267 aa)
	C3ZBU3_BRAFL	RDD domain-containing protein. (241 aa)
	C3ZBU6_BRAFL	Uncharacterized protein. (223 aa)
	C3ZC11_BRAFL	Uncharacterized protein. (937 aa)
	C3ZFP9_BRAFL	TPR_REGION domain-containing protein. (251 aa)
	C3ZHK7_BRAFL	Uncharacterized protein. (200 aa)
	C3ZJ71_BRAFL	TPR_REGION domain-containing protein. (190 aa)
	C3ZWW4_BRAFL	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (94 aa)
	C3ZX83_BRAFL	Uncharacterized protein. (452 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSN3_BRAFL	C3XUA6_BRAFL	C3XSN3	C3XUA6	UBX domain-containing protein.	Ufd2P_core domain-containing protein.	0.651
C3XSN3_BRAFL	C3YKP5_BRAFL	C3XSN3	C3YKP5	UBX domain-containing protein.	UBX domain-containing protein.	0.415
C3XSN3_BRAFL	C3YRG8_BRAFL	C3XSN3	C3YRG8	UBX domain-containing protein.	Uncharacterized protein.	0.503
C3XSN3_BRAFL	C3YTH4_BRAFL	C3XSN3	C3YTH4	UBX domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.970
C3XSN3_BRAFL	C3Z3Y7_BRAFL	C3XSN3	C3Z3Y7	UBX domain-containing protein.	Uncharacterized protein.	0.522
C3XTS8_BRAFL	C3Y0B3_BRAFL	C3XTS8	C3Y0B3	Uncharacterized protein.	RING-type domain-containing protein.	0.482
C3XTS8_BRAFL	C3YFB3_BRAFL	C3XTS8	C3YFB3	Uncharacterized protein.	Uncharacterized protein.	0.482
C3XTS8_BRAFL	C3YTH4_BRAFL	C3XTS8	C3YTH4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.468
C3XTS8_BRAFL	C3Z3Y7_BRAFL	C3XTS8	C3Z3Y7	Uncharacterized protein.	Uncharacterized protein.	0.405
C3XUA6_BRAFL	C3XSN3_BRAFL	C3XUA6	C3XSN3	Ufd2P_core domain-containing protein.	UBX domain-containing protein.	0.651
C3XUA6_BRAFL	C3YAF2_BRAFL	C3XUA6	C3YAF2	Ufd2P_core domain-containing protein.	OTU domain-containing protein.	0.967
C3XUA6_BRAFL	C3YKP5_BRAFL	C3XUA6	C3YKP5	Ufd2P_core domain-containing protein.	UBX domain-containing protein.	0.588
C3XUA6_BRAFL	C3YSK2_BRAFL	C3XUA6	C3YSK2	Ufd2P_core domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.642
C3XUA6_BRAFL	C3YTH4_BRAFL	C3XUA6	C3YTH4	Ufd2P_core domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.610
C3XUA6_BRAFL	C3Z3Y7_BRAFL	C3XUA6	C3Z3Y7	Ufd2P_core domain-containing protein.	Uncharacterized protein.	0.979
C3XUA6_BRAFL	C3Z5R6_BRAFL	C3XUA6	C3Z5R6	Ufd2P_core domain-containing protein.	Uncharacterized protein.	0.588
C3XUA6_BRAFL	C3Z5R8_BRAFL	C3XUA6	C3Z5R8	Ufd2P_core domain-containing protein.	Uncharacterized protein.	0.588
C3XUA6_BRAFL	C3Z989_BRAFL	C3XUA6	C3Z989	Ufd2P_core domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.500
C3Y0B3_BRAFL	C3XTS8_BRAFL	C3Y0B3	C3XTS8	RING-type domain-containing protein.	Uncharacterized protein.	0.482
C3Y0B3_BRAFL	C3Y446_BRAFL	C3Y0B3	C3Y446	RING-type domain-containing protein.	CUE domain-containing protein.	0.637