(31 nodes) Phagocytic vesicle membrane network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	C3Y4F2_BRAFL	TIR domain-containing protein. (554 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3YFJ1_BRAFL	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (210 aa)
	C3ZWZ0_BRAFL	TIR domain-containing protein. (99 aa)
	C3ZWY9_BRAFL	TIR domain-containing protein. (116 aa)
	C3ZWR5_BRAFL	TIR domain-containing protein. (141 aa)
	C3ZSY6_BRAFL	TIR domain-containing protein. (160 aa)
	C3ZMF8_BRAFL	Uncharacterized protein. (677 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)
	C3ZC01_BRAFL	Uncharacterized protein. (164 aa)
	C3ZA99_BRAFL	Uncharacterized protein. (557 aa)
	C3Z904_BRAFL	Uncharacterized protein. (205 aa)
	C3Z844_BRAFL	TIR domain-containing protein. (575 aa)
	C3Z839_BRAFL	TIR domain-containing protein. (295 aa)
	C3Z838_BRAFL	TIR domain-containing protein. (684 aa)
	C3Z6Q7_BRAFL	TIR domain-containing protein. (314 aa)
	C3Z6K0_BRAFL	Uncharacterized protein. (269 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3YXT0_BRAFL	Uncharacterized protein. (694 aa)
	C3YXJ4_BRAFL	IPPc domain-containing protein. (199 aa)
	C3YXJ2_BRAFL	Rho-GAP domain-containing protein. (531 aa)
	C3YW66_BRAFL	Ras-related protein rab-9a. (180 aa)
	C3YRV4_BRAFL	Uncharacterized protein. (198 aa)
	C3YRU5_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	C3YL88_BRAFL	Uncharacterized protein. (980 aa)
	C3YKX3_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (206 aa)
	C3YL25_BRAFL	TIR domain-containing protein. (332 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZV0_BRAFL	C3ZEI0_BRAFL	C3XZV0	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Y041_BRAFL	C3ZEI0_BRAFL	C3Y041	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YKX3_BRAFL	C3YRU5_BRAFL	C3YKX3	C3YRU5	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.563
C3YKX3_BRAFL	C3Z6K0_BRAFL	C3YKX3	C3Z6K0	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.520
C3YL87_BRAFL	C3ZEI0_BRAFL	C3YL87	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YL88_BRAFL	C3ZEI0_BRAFL	C3YL88	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3YRU5_BRAFL	C3YKX3_BRAFL	C3YRU5	C3YKX3	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.563
C3YRU5_BRAFL	C3Z6K0_BRAFL	C3YRU5	C3Z6K0	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.690
C3YRU5_BRAFL	C3ZEI0_BRAFL	C3YRU5	C3ZEI0	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.504
C3YRV4_BRAFL	C3ZC01_BRAFL	C3YRV4	C3ZC01	Uncharacterized protein.	Uncharacterized protein.	0.457
C3YW66_BRAFL	C3ZC01_BRAFL	C3YW66	C3ZC01	Ras-related protein rab-9a.	Uncharacterized protein.	0.479
C3YXJ2_BRAFL	C3YXJ4_BRAFL	C3YXJ2	C3YXJ4	Rho-GAP domain-containing protein.	IPPc domain-containing protein.	0.931
C3YXJ4_BRAFL	C3YXJ2_BRAFL	C3YXJ4	C3YXJ2	IPPc domain-containing protein.	Rho-GAP domain-containing protein.	0.931
C3YXT0_BRAFL	C3ZEI0_BRAFL	C3YXT0	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3Z5U7_BRAFL	C3ZEI0_BRAFL	C3Z5U7	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.513
C3Z6K0_BRAFL	C3YKX3_BRAFL	C3Z6K0	C3YKX3	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.520
C3Z6K0_BRAFL	C3YRU5_BRAFL	C3Z6K0	C3YRU5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.690
C3Z904_BRAFL	C3ZEI0_BRAFL	C3Z904	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.535
C3ZA99_BRAFL	C3ZEI0_BRAFL	C3ZA99	C3ZEI0	Uncharacterized protein.	Uncharacterized protein.	0.483
C3ZC01_BRAFL	C3YRV4_BRAFL	C3ZC01	C3YRV4	Uncharacterized protein.	Uncharacterized protein.	0.457