(37 nodes) Cytoplasmic microtubule organization network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZFD5_BRAFL	COS domain-containing protein. (193 aa)
	C3ZFD4_BRAFL	B30.2/SPRY domain-containing protein. (385 aa)
	C3ZEY6_BRAFL	CAP-Gly domain-containing protein. (233 aa)
	C3Y204_BRAFL	Uncharacterized protein. (596 aa)
	C3XZA7_BRAFL	Uncharacterized protein. (99 aa)
	C3XWD2_BRAFL	PCM1_C domain-containing protein. (1969 aa)
	C3XRT2_BRAFL	Uncharacterized protein. (863 aa)
	C3XRY6_BRAFL	Katanin_con80 domain-containing protein. (344 aa)
	HOOK_BRAFL	Protein Hook homolog; May function to promote vesicle trafficking and/or fusion. May act to link a number of membrane-bound organelles to the cytoskeleton (By similarity). (723 aa)
	C3ZE96_BRAFL	Gamma-tubulin complex component. (912 aa)
	C3Z774_BRAFL	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (606 aa)
	C3Z4Z7_BRAFL	Cnn_1N domain-containing protein. (2545 aa)
	C3Z492_BRAFL	Uncharacterized protein. (113 aa)
	C3Z491_BRAFL	Uncharacterized protein. (414 aa)
	C3Z3J5_BRAFL	Uncharacterized protein. (192 aa)
	C3Z2U5_BRAFL	Gamma-tubulin complex component. (462 aa)
	C3YKK9_BRAFL	CKK domain-containing protein. (123 aa)
	C3YE46_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YE60_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YHE7_BRAFL	Uncharacterized protein. (1076 aa)
	C3YJ18_BRAFL	Uncharacterized protein. (349 aa)
	C3YJ64_BRAFL	CAP-Gly domain-containing protein. (113 aa)
	C3YJ65_BRAFL	Dynactin domain-containing protein. (1139 aa)
	C3Y205_BRAFL	Uncharacterized protein. (454 aa)
	C3Y9S5_BRAFL	Uncharacterized protein. (481 aa)
	C3YBE7_BRAFL	Uncharacterized protein. (1105 aa)
	C3YBF1_BRAFL	Gamma-tubulin complex component. (171 aa)
	C3YDF0_BRAFL	B30.2/SPRY domain-containing protein. (137 aa)
	C3ZYG0_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (1765 aa)
	C3ZUN4_BRAFL	CCHC-type domain-containing protein. (583 aa)
	C3ZUC1_BRAFL	Uncharacterized protein. (1036 aa)
	C3ZUC0_BRAFL	Gamma-tubulin complex component. (313 aa)
	C3ZSH7_BRAFL	Calponin-homology (CH) domain-containing protein. (1021 aa)
	C3ZPX6_BRAFL	Gamma-tubulin complex component. (1089 aa)
	C3ZJH8_BRAFL	Tubulin domain-containing protein; Belongs to the tubulin family. (419 aa)
	C3ZHD8_BRAFL	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (460 aa)
	C3ZH04_BRAFL	Uncharacterized protein. (578 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XWD2_BRAFL	HOOK_BRAFL	C3XWD2	B6MFW3	PCM1_C domain-containing protein.	Protein Hook homolog; May function to promote vesicle trafficking and/or fusion. May act to link a number of membrane-bound organelles to the cytoskeleton (By similarity).	0.446
C3Y204_BRAFL	C3Y205_BRAFL	C3Y204	C3Y205	Uncharacterized protein.	Uncharacterized protein.	0.942
C3Y205_BRAFL	C3Y204_BRAFL	C3Y205	C3Y204	Uncharacterized protein.	Uncharacterized protein.	0.942
C3YBE7_BRAFL	C3YBF1_BRAFL	C3YBE7	C3YBF1	Uncharacterized protein.	Gamma-tubulin complex component.	0.933
C3YBE7_BRAFL	C3Z2U5_BRAFL	C3YBE7	C3Z2U5	Uncharacterized protein.	Gamma-tubulin complex component.	0.995
C3YBE7_BRAFL	C3ZE96_BRAFL	C3YBE7	C3ZE96	Uncharacterized protein.	Gamma-tubulin complex component.	0.993
C3YBE7_BRAFL	C3ZHD8_BRAFL	C3YBE7	C3ZHD8	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.985
C3YBE7_BRAFL	C3ZJH8_BRAFL	C3YBE7	C3ZJH8	Uncharacterized protein.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.729
C3YBE7_BRAFL	C3ZPX6_BRAFL	C3YBE7	C3ZPX6	Uncharacterized protein.	Gamma-tubulin complex component.	0.989
C3YBE7_BRAFL	C3ZUC0_BRAFL	C3YBE7	C3ZUC0	Uncharacterized protein.	Gamma-tubulin complex component.	0.977
C3YBE7_BRAFL	C3ZUC1_BRAFL	C3YBE7	C3ZUC1	Uncharacterized protein.	Uncharacterized protein.	0.952
C3YBE7_BRAFL	C3ZYG0_BRAFL	C3YBE7	C3ZYG0	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.952
C3YBF1_BRAFL	C3YBE7_BRAFL	C3YBF1	C3YBE7	Gamma-tubulin complex component.	Uncharacterized protein.	0.933
C3YBF1_BRAFL	C3Z2U5_BRAFL	C3YBF1	C3Z2U5	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.969
C3YBF1_BRAFL	C3ZE96_BRAFL	C3YBF1	C3ZE96	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.961
C3YBF1_BRAFL	C3ZHD8_BRAFL	C3YBF1	C3ZHD8	Gamma-tubulin complex component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.948
C3YBF1_BRAFL	C3ZJH8_BRAFL	C3YBF1	C3ZJH8	Gamma-tubulin complex component.	Tubulin domain-containing protein; Belongs to the tubulin family.	0.729
C3YBF1_BRAFL	C3ZPX6_BRAFL	C3YBF1	C3ZPX6	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.956
C3YBF1_BRAFL	C3ZUC0_BRAFL	C3YBF1	C3ZUC0	Gamma-tubulin complex component.	Gamma-tubulin complex component.	0.776
C3YBF1_BRAFL	C3ZUC1_BRAFL	C3YBF1	C3ZUC1	Gamma-tubulin complex component.	Uncharacterized protein.	0.776