(44 nodes) Chromatin DNA binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3XXW1_BRAFL	H15 domain-containing protein. (61 aa)
	C3XXM6_BRAFL	TPR_REGION domain-containing protein. (1022 aa)
	Thop1.1	BZIP domain-containing protein. (336 aa)
	C3XVR6_BRAFL	BZIP domain-containing protein. (242 aa)
	C3XVJ9_BRAFL	Uncharacterized protein. (1212 aa)
	C3XUR9_BRAFL	H15 domain-containing protein. (203 aa)
	C3XSV0_BRAFL	TAZ-type domain-containing protein. (87 aa)
	C3XQZ7_BRAFL	VEFS-Box domain-containing protein. (581 aa)
	C3XQQ3_BRAFL	MSC domain-containing protein. (153 aa)
	C3ZZ31_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZZ29_BRAFL	Uncharacterized protein. (120 aa)
	C3ZYB3_BRAFL	CP2 domain-containing protein. (601 aa)
	C3ZXI3_BRAFL	TAZ-type domain-containing protein. (131 aa)
	C3ZWY4_BRAFL	CBFD_NFYB_HMF domain-containing protein. (153 aa)
	C3ZUG6_BRAFL	Uncharacterized protein. (3563 aa)
	C3ZTM5_BRAFL	JmjC domain-containing protein. (2659 aa)
	C3ZTM3_BRAFL	Uncharacterized protein. (142 aa)
	C3ZSP0_BRAFL	BZIP domain-containing protein. (404 aa)
	C3ZQQ7_BRAFL	Uncharacterized protein. (663 aa)
	C3ZPQ2_BRAFL	Uncharacterized protein. (343 aa)
	C3ZNL4_BRAFL	H15 domain-containing protein. (58 aa)
	C3ZNA6_BRAFL	Uncharacterized protein. (294 aa)
	C3ZK41_BRAFL	RanBD1 domain-containing protein. (358 aa)
	C3ZFF7_BRAFL	Uncharacterized protein. (392 aa)
	C3ZDP8_BRAFL	Uncharacterized protein. (1318 aa)
	C3Z7N5_BRAFL	GRAM domain-containing protein. (257 aa)
	C3Z7F2_BRAFL	H15 domain-containing protein. (110 aa)
	C3Z7A7_BRAFL	H15 domain-containing protein. (85 aa)
	C3Z793_BRAFL	H15 domain-containing protein. (74 aa)
	C3Z5I9_BRAFL	Macro domain-containing protein; Belongs to the histone H2A family. (383 aa)
	C3Z5F1_BRAFL	BHLH domain-containing protein. (56 aa)
	C3YZR1_BRAFL	Uncharacterized protein. (490 aa)
	C3YX76_BRAFL	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (272 aa)
	C3YWD1_BRAFL	H15 domain-containing protein. (157 aa)
	C3YRS7_BRAFL	Uncharacterized protein. (466 aa)
	C3YIU8_BRAFL	Uncharacterized protein. (848 aa)
	C3Y7S4_BRAFL	Uncharacterized protein. (845 aa)
	C3Y7S2_BRAFL	Uncharacterized protein. (444 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3Y3W0_BRAFL	Uncharacterized protein. (678 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)
	C3XZS2_BRAFL	Uncharacterized protein. (652 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQQ3_BRAFL	C3Y332_BRAFL	C3XQQ3	C3Y332	MSC domain-containing protein.	Uncharacterized protein.	0.554
C3XQZ7_BRAFL	C3Z5I9_BRAFL	C3XQZ7	C3Z5I9	VEFS-Box domain-containing protein.	Macro domain-containing protein; Belongs to the histone H2A family.	0.490
C3XQZ7_BRAFL	C3ZDP8_BRAFL	C3XQZ7	C3ZDP8	VEFS-Box domain-containing protein.	Uncharacterized protein.	0.975
C3XSV0_BRAFL	C3Y3W0_BRAFL	C3XSV0	C3Y3W0	TAZ-type domain-containing protein.	Uncharacterized protein.	0.467
C3XZS2_BRAFL	C3ZK41_BRAFL	C3XZS2	C3ZK41	Uncharacterized protein.	RanBD1 domain-containing protein.	0.402
C3Y332_BRAFL	C3XQQ3_BRAFL	C3Y332	C3XQQ3	Uncharacterized protein.	MSC domain-containing protein.	0.554
C3Y3W0_BRAFL	C3XSV0_BRAFL	C3Y3W0	C3XSV0	Uncharacterized protein.	TAZ-type domain-containing protein.	0.467
C3Y3W0_BRAFL	C3YIU8_BRAFL	C3Y3W0	C3YIU8	Uncharacterized protein.	Uncharacterized protein.	0.409
C3Y3W0_BRAFL	C3ZPQ2_BRAFL	C3Y3W0	C3ZPQ2	Uncharacterized protein.	Uncharacterized protein.	0.409
C3Y3W0_BRAFL	C3ZUG6_BRAFL	C3Y3W0	C3ZUG6	Uncharacterized protein.	Uncharacterized protein.	0.518
C3Y3W0_BRAFL	C3ZXI3_BRAFL	C3Y3W0	C3ZXI3	Uncharacterized protein.	TAZ-type domain-containing protein.	0.518
C3Y3W0_BRAFL	C3ZZ31_BRAFL	C3Y3W0	C3ZZ31	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.409
C3Y6A4_BRAFL	C3Z5I9_BRAFL	C3Y6A4	C3Z5I9	RuvB-like helicase; Belongs to the RuvB family.	Macro domain-containing protein; Belongs to the histone H2A family.	0.445
C3Y6A4_BRAFL	C3ZDP8_BRAFL	C3Y6A4	C3ZDP8	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.515
C3Y7S2_BRAFL	C3Y7S4_BRAFL	C3Y7S2	C3Y7S4	Uncharacterized protein.	Uncharacterized protein.	0.632
C3Y7S4_BRAFL	C3Y7S2_BRAFL	C3Y7S4	C3Y7S2	Uncharacterized protein.	Uncharacterized protein.	0.632
C3YIU8_BRAFL	C3Y3W0_BRAFL	C3YIU8	C3Y3W0	Uncharacterized protein.	Uncharacterized protein.	0.409
C3YRS7_BRAFL	C3ZK41_BRAFL	C3YRS7	C3ZK41	Uncharacterized protein.	RanBD1 domain-containing protein.	0.402
C3YWD1_BRAFL	C3Z7A7_BRAFL	C3YWD1	C3Z7A7	H15 domain-containing protein.	H15 domain-containing protein.	0.473
C3YX76_BRAFL	C3ZWY4_BRAFL	C3YX76	C3ZWY4	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	CBFD_NFYB_HMF domain-containing protein.	0.691