(114 nodes) Positive regulation of response to external stimulus network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPG1_BRAFL	WW domain-containing protein. (284 aa)
	C3XRN1_BRAFL	Uncharacterized protein. (1244 aa)
	C3XS07_BRAFL	Uncharacterized protein. (516 aa)
	C3XSS2_BRAFL	PX domain-containing protein. (402 aa)
	C3XTB5_BRAFL	Uncharacterized protein. (932 aa)
	C3XTR8_BRAFL	SET domain-containing protein. (327 aa)
	C3XU40_BRAFL	Uncharacterized protein. (2155 aa)
	C3XU47_BRAFL	Uncharacterized protein. (300 aa)
	C3XUC4_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (399 aa)
	C3XUF5_BRAFL	SET domain-containing protein. (287 aa)
	C3XUV9_BRAFL	Uncharacterized protein. (165 aa)
	C3XVG1_BRAFL	Uncharacterized protein. (1015 aa)
	C3XW39_BRAFL	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (163 aa)
	C3XWJ2_BRAFL	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (252 aa)
	C3XX88_BRAFL	Uncharacterized protein. (410 aa)
	C3XY87_BRAFL	SET domain-containing protein. (604 aa)
	C3XYI0_BRAFL	DJ-1_PfpI domain-containing protein. (190 aa)
	C3XZ17_BRAFL	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (317 aa)
	C3XZ97_BRAFL	Uncharacterized protein. (522 aa)
	C3XZR9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (335 aa)
	C3Y1A5_BRAFL	Focal_AT domain-containing protein. (137 aa)
	C3Y1A6_BRAFL	Uncharacterized protein. (977 aa)
	C3Y1W9_BRAFL	BZIP domain-containing protein. (423 aa)
	C3Y3Q8_BRAFL	Uncharacterized protein. (1459 aa)
	C3Y3Z2_BRAFL	Protein kinase domain-containing protein. (954 aa)
	C3Y3Z6_BRAFL	Uncharacterized protein. (448 aa)
	C3Y4S6_BRAFL	GH16 domain-containing protein. (483 aa)
	C3Y5H3_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (470 aa)
	C3Y5S3_BRAFL	Uncharacterized protein. (1043 aa)
	C3Y759_BRAFL	Pep_M12B_propep domain-containing protein. (239 aa)
	C3Y7A9_BRAFL	Protein kinase domain-containing protein. (739 aa)
	C3Y7F3_BRAFL	Protein kinase domain-containing protein. (702 aa)
	C3Y8G6_BRAFL	Death domain-containing protein. (1064 aa)
	C3Y8L9_BRAFL	Lysine--tRNA ligase. (593 aa)
	C3Y9X7_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (399 aa)
	C3Y9X8_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (568 aa)
	C3YAT5_BRAFL	SEFIR domain-containing protein. (944 aa)
	C3YBK3_BRAFL	Uncharacterized protein. (432 aa)
	C3YEQ4_BRAFL	Uncharacterized protein. (453 aa)
	C3YEW7_BRAFL	Uncharacterized protein. (460 aa)
	C3YFI0_BRAFL	Uncharacterized protein. (180 aa)
	C3YGR2_BRAFL	Uncharacterized protein. (416 aa)
	C3YH63_BRAFL	Uncharacterized protein. (215 aa)
	C3YI94_BRAFL	Uncharacterized protein. (101 aa)
	C3YJ83_BRAFL	RING-type domain-containing protein. (180 aa)
	C3YKX9_BRAFL	Uncharacterized protein. (564 aa)
	C3YLE3_BRAFL	Lipase domain-containing protein. (72 aa)
	C3YLE6_BRAFL	Uncharacterized protein. (502 aa)
	C3YLE8_BRAFL	Lipase domain-containing protein. (83 aa)
	C3YPU4_BRAFL	CCHC NOA-type domain-containing protein. (873 aa)
	C3YQ95_BRAFL	Uncharacterized protein. (163 aa)
	C3YQA9_BRAFL	Uncharacterized protein. (198 aa)
	C3YQF1_BRAFL	PUM-HD domain-containing protein. (734 aa)
	C3YT10_BRAFL	Uncharacterized protein. (266 aa)
	C3YUP9_BRAFL	Protein kinase domain-containing protein. (925 aa)
	C3YW19_BRAFL	Myostatin. (342 aa)
	C3YW57_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)
	C3YYC3_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
	C3YYC7_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (303 aa)
	C3YZ52_BRAFL	Uncharacterized protein. (448 aa)
	C3Z0K2_BRAFL	Uncharacterized protein. (664 aa)
	C3Z0K3_BRAFL	Uncharacterized protein. (1018 aa)
	C3Z1F1_BRAFL	Uncharacterized protein. (468 aa)
	C3Z1F8_BRAFL	Ku domain-containing protein. (613 aa)
	C3Z1L4_BRAFL	NACHT domain-containing protein. (1135 aa)
	C3Z260_BRAFL	Uncharacterized protein. (528 aa)
	C3Z261_BRAFL	Uncharacterized protein. (786 aa)
	C3Z2Q8_BRAFL	SEFIR domain-containing protein. (686 aa)
	C3Z2T5_BRAFL	Uncharacterized protein. (454 aa)
	C3Z2Z1_BRAFL	Uncharacterized protein. (1339 aa)
	C3Z4P8_BRAFL	Uncharacterized protein. (195 aa)
	C3Z5H8_BRAFL	CC2-LZ domain-containing protein. (231 aa)
	C3Z5J9_BRAFL	CC2-LZ domain-containing protein. (694 aa)
	C3Z5Q3_BRAFL	Uncharacterized protein. (1287 aa)
	C3Z934_BRAFL	Uncharacterized protein. (123 aa)
	C3Z936_BRAFL	Uncharacterized protein. (365 aa)
	C3Z937_BRAFL	Uncharacterized protein. (111 aa)
	C3Z9D3_BRAFL	Uncharacterized protein. (281 aa)
	C3ZAE2_BRAFL	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (707 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZBL6_BRAFL	Uncharacterized protein. (894 aa)
	C3ZBY7_BRAFL	Uncharacterized protein. (1553 aa)
	C3ZBY9_BRAFL	C2H2-type domain-containing protein. (1592 aa)
	C3ZBZ0_BRAFL	Uncharacterized protein. (1321 aa)
	C3ZBZ2_BRAFL	Uncharacterized protein. (1771 aa)
	C3ZE86_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (290 aa)
	C3ZE87_BRAFL	Protein kinase domain-containing protein. (659 aa)
	C3ZEI0_BRAFL	Uncharacterized protein. (246 aa)
	C3ZH16_BRAFL	Uncharacterized protein. (473 aa)
	C3ZHK3_BRAFL	ANK_REP_REGION domain-containing protein. (221 aa)
	C3ZHY5_BRAFL	SAM domain-containing protein. (438 aa)
	C3ZIN0_BRAFL	Lipase domain-containing protein. (78 aa)
	C3ZJF8_BRAFL	Uncharacterized protein. (565 aa)
	C3ZM34_BRAFL	Uncharacterized protein. (322 aa)
	C3ZN65_BRAFL	Uncharacterized protein. (147 aa)
	C3ZPZ7_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (451 aa)
	C3ZQP5_BRAFL	Disintegrin domain-containing protein. (277 aa)
	C3ZQP6_BRAFL	Peptidase M12B domain-containing protein. (99 aa)
	C3ZQU3_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (456 aa)
	C3ZQU4_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (456 aa)
	C3ZQX3_BRAFL	Protein kinase domain-containing protein. (509 aa)
	C3ZS12_BRAFL	Uncharacterized protein. (970 aa)
	C3ZSM7_BRAFL	Ku domain-containing protein. (716 aa)
	C3ZSQ6_BRAFL	RIO domain-containing protein. (470 aa)
	C3ZUG9_BRAFL	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	C3ZUH5_BRAFL	Uncharacterized protein. (1531 aa)
	C3ZUH6_BRAFL	Uncharacterized protein. (1088 aa)
	C3ZWS9_BRAFL	EGF-like domain-containing protein. (710 aa)
	C3ZXZ8_BRAFL	Death domain-containing protein. (298 aa)
	C3ZYZ4_BRAFL	Uncharacterized protein. (602 aa)
	C3ZZM6_BRAFL	Uncharacterized protein. (197 aa)
	C4A0W8_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU40_BRAFL	C3Y7A9_BRAFL	C3XU40	C3Y7A9	Uncharacterized protein.	Protein kinase domain-containing protein.	0.872
C3XU40_BRAFL	C3Y8G6_BRAFL	C3XU40	C3Y8G6	Uncharacterized protein.	Death domain-containing protein.	0.813
C3XU40_BRAFL	C3YPU4_BRAFL	C3XU40	C3YPU4	Uncharacterized protein.	CCHC NOA-type domain-containing protein.	0.576
C3XU40_BRAFL	C3ZE87_BRAFL	C3XU40	C3ZE87	Uncharacterized protein.	Protein kinase domain-containing protein.	0.872
C3XVG1_BRAFL	C3ZBY7_BRAFL	C3XVG1	C3ZBY7	Uncharacterized protein.	Uncharacterized protein.	0.579
C3XVG1_BRAFL	C3ZBY9_BRAFL	C3XVG1	C3ZBY9	Uncharacterized protein.	C2H2-type domain-containing protein.	0.578
C3XVG1_BRAFL	C3ZBZ0_BRAFL	C3XVG1	C3ZBZ0	Uncharacterized protein.	Uncharacterized protein.	0.580
C3XVG1_BRAFL	C3ZBZ2_BRAFL	C3XVG1	C3ZBZ2	Uncharacterized protein.	Uncharacterized protein.	0.577
C3XZ17_BRAFL	C3YYC3_BRAFL	C3XZ17	C3YYC3	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3XZ17_BRAFL	C3Z5Q3_BRAFL	C3XZ17	C3Z5Q3	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	Uncharacterized protein.	0.999
C3XZR9_BRAFL	C3YI94_BRAFL	C3XZR9	C3YI94	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.484
C3XZR9_BRAFL	C3YJ83_BRAFL	C3XZR9	C3YJ83	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.484
C3XZR9_BRAFL	C3Z4P8_BRAFL	C3XZR9	C3Z4P8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.444
C3XZR9_BRAFL	C3ZE87_BRAFL	C3XZR9	C3ZE87	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.536
C3XZR9_BRAFL	C3ZH16_BRAFL	C3XZR9	C3ZH16	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.431
C3XZR9_BRAFL	C3ZN65_BRAFL	C3XZR9	C3ZN65	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.484
C3XZR9_BRAFL	C3ZXZ8_BRAFL	C3XZR9	C3ZXZ8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Death domain-containing protein.	0.444
C3XZR9_BRAFL	C3ZZM6_BRAFL	C3XZR9	C3ZZM6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.444
C3Y3Z2_BRAFL	C3Z2Z1_BRAFL	C3Y3Z2	C3Z2Z1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.401
C3Y7A9_BRAFL	C3XU40_BRAFL	C3Y7A9	C3XU40	Protein kinase domain-containing protein.	Uncharacterized protein.	0.872