(37 nodes) Positive regulation of telomere maintenance network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQM1_BRAFL	Homeobox domain-containing protein. (171 aa)
	C3XS21_BRAFL	T-complex protein 1 subunit delta. (533 aa)
	C3XSK4_BRAFL	Uncharacterized protein. (961 aa)
	C3XVD1_BRAFL	Uncharacterized protein. (3715 aa)
	C3Y0I8_BRAFL	Protein kinase domain-containing protein. (460 aa)
	C3Y0Y4_BRAFL	NFRKB_winged domain-containing protein. (1283 aa)
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3Y7R6_BRAFL	PUA domain-containing protein. (470 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3Y9J6_BRAFL	HMG box domain-containing protein. (334 aa)
	C3YCM0_BRAFL	F-box domain-containing protein. (317 aa)
	C3YD16_BRAFL	Telo_bind domain-containing protein. (396 aa)
	C3YG90_BRAFL	FHA_2 domain-containing protein. (633 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YQW4_BRAFL	Protein kinase domain-containing protein. (356 aa)
	C3YT49_BRAFL	Uncharacterized protein. (471 aa)
	C3YWA5_BRAFL	AAA_23 domain-containing protein. (187 aa)
	C3YYL6_BRAFL	FHA domain-containing protein. (204 aa)
	C3YYL7_BRAFL	MCRS_N domain-containing protein. (235 aa)
	C3YZR1_BRAFL	Uncharacterized protein. (490 aa)
	C3Z419_BRAFL	GIY-YIG domain-containing protein. (155 aa)
	C3Z4M1_BRAFL	Uncharacterized protein. (567 aa)
	C3Z9X0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2531 aa)
	C3ZCC7_BRAFL	Uncharacterized protein. (535 aa)
	C3ZG27_BRAFL	Ubiquitin carboxyl-terminal hydrolase. (300 aa)
	C3ZH07_BRAFL	Uncharacterized protein. (545 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZMU1_BRAFL	Uncharacterized protein. (1878 aa)
	C3ZPE4_BRAFL	Protein kinase domain-containing protein. (427 aa)
	C3ZPH4_BRAFL	T-complex protein 1 subunit gamma. (540 aa)
	C3ZQ21_BRAFL	HTH myb-type domain-containing protein. (55 aa)
	C3ZSM7_BRAFL	Ku domain-containing protein. (716 aa)
	C3ZV87_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3ZXI5_BRAFL	Homeobox domain-containing protein. (430 aa)
	C4A088_BRAFL	BTB domain-containing protein. (2428 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS21_BRAFL	C3ZCC7_BRAFL	C3XS21	C3ZCC7	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999
C3XS21_BRAFL	C3ZH07_BRAFL	C3XS21	C3ZH07	T-complex protein 1 subunit delta.	Uncharacterized protein.	0.999
C3XS21_BRAFL	C3ZPH4_BRAFL	C3XS21	C3ZPH4	T-complex protein 1 subunit delta.	T-complex protein 1 subunit gamma.	0.999
C3XSK4_BRAFL	C3XVD1_BRAFL	C3XSK4	C3XVD1	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XSK4_BRAFL	C3Y0Y4_BRAFL	C3XSK4	C3Y0Y4	Uncharacterized protein.	NFRKB_winged domain-containing protein.	0.763
C3XSK4_BRAFL	C3Y6A4_BRAFL	C3XSK4	C3Y6A4	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.433
C3XSK4_BRAFL	C3Y9J6_BRAFL	C3XSK4	C3Y9J6	Uncharacterized protein.	HMG box domain-containing protein.	0.812
C3XSK4_BRAFL	C3YYL6_BRAFL	C3XSK4	C3YYL6	Uncharacterized protein.	FHA domain-containing protein.	0.677
C3XSK4_BRAFL	C3YYL7_BRAFL	C3XSK4	C3YYL7	Uncharacterized protein.	MCRS_N domain-containing protein.	0.750
C3XSK4_BRAFL	C3ZG27_BRAFL	C3XSK4	C3ZG27	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.617
C3XSK4_BRAFL	C3ZMU1_BRAFL	C3XSK4	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XVD1_BRAFL	C3XSK4_BRAFL	C3XVD1	C3XSK4	Uncharacterized protein.	Uncharacterized protein.	0.763
C3XVD1_BRAFL	C3Y0Y4_BRAFL	C3XVD1	C3Y0Y4	Uncharacterized protein.	NFRKB_winged domain-containing protein.	0.921
C3XVD1_BRAFL	C3Y6A4_BRAFL	C3XVD1	C3Y6A4	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.944
C3XVD1_BRAFL	C3Y9J6_BRAFL	C3XVD1	C3Y9J6	Uncharacterized protein.	HMG box domain-containing protein.	0.728
C3XVD1_BRAFL	C3YYL6_BRAFL	C3XVD1	C3YYL6	Uncharacterized protein.	FHA domain-containing protein.	0.783
C3XVD1_BRAFL	C3YYL7_BRAFL	C3XVD1	C3YYL7	Uncharacterized protein.	MCRS_N domain-containing protein.	0.847
C3XVD1_BRAFL	C3ZG27_BRAFL	C3XVD1	C3ZG27	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.595
C3XVD1_BRAFL	C3ZMU1_BRAFL	C3XVD1	C3ZMU1	Uncharacterized protein.	Uncharacterized protein.	0.540
C3Y0Y4_BRAFL	C3XSK4_BRAFL	C3Y0Y4	C3XSK4	NFRKB_winged domain-containing protein.	Uncharacterized protein.	0.763