(25 nodes) Positive regulation of type I interferon production network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Z5Q3_BRAFL	Uncharacterized protein. (1287 aa)
	C3Z8J0_BRAFL	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (576 aa)
	C3XPG1_BRAFL	WW domain-containing protein. (284 aa)
	C3Y3Q8_BRAFL	Uncharacterized protein. (1459 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3Y2Q3_BRAFL	Helicase ATP-binding domain-containing protein. (318 aa)
	C3Y0M6_BRAFL	Uncharacterized protein. (846 aa)
	C3XZ17_BRAFL	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (317 aa)
	C3XTB5_BRAFL	Uncharacterized protein. (932 aa)
	C3YEA6_BRAFL	WW domain-containing protein. (352 aa)
	C3YEB3_BRAFL	Uncharacterized protein. (975 aa)
	C3YJ11_BRAFL	Uncharacterized protein. (701 aa)
	C3YPK8_BRAFL	Uncharacterized protein. (1211 aa)
	C3YQ95_BRAFL	Uncharacterized protein. (163 aa)
	C3YQA9_BRAFL	Uncharacterized protein. (198 aa)
	C3YWB0_BRAFL	Uncharacterized protein. (672 aa)
	C3YWB1_BRAFL	Uncharacterized protein. (613 aa)
	C3YWB2_BRAFL	Uncharacterized protein. (1279 aa)
	C3XS07_BRAFL	Uncharacterized protein. (516 aa)
	C3YYC3_BRAFL	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
	C3Y9J2_BRAFL	IRF tryptophan pentad repeat domain-containing protein. (114 aa)
	C3ZBL6_BRAFL	Uncharacterized protein. (894 aa)
	C3ZE62_BRAFL	IRF tryptophan pentad repeat domain-containing protein. (134 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZSQ6_BRAFL	RIO domain-containing protein. (470 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS07_BRAFL	C3Z8J0_BRAFL	C3XS07	C3Z8J0	Uncharacterized protein.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.457
C3XZ17_BRAFL	C3YEB3_BRAFL	C3XZ17	C3YEB3	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	Uncharacterized protein.	0.992
C3XZ17_BRAFL	C3YYC3_BRAFL	C3XZ17	C3YYC3	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3XZ17_BRAFL	C3Z5Q3_BRAFL	C3XZ17	C3Z5Q3	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	Uncharacterized protein.	0.999
C3Y2Q3_BRAFL	C3ZIA7_BRAFL	C3Y2Q3	C3ZIA7	Helicase ATP-binding domain-containing protein.	Helicase C-terminal domain-containing protein.	0.584
C3Y332_BRAFL	C3ZIA7_BRAFL	C3Y332	C3ZIA7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.708
C3YEB3_BRAFL	C3XZ17_BRAFL	C3YEB3	C3XZ17	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.992
C3YEB3_BRAFL	C3YYC3_BRAFL	C3YEB3	C3YYC3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
C3YEB3_BRAFL	C3Z5Q3_BRAFL	C3YEB3	C3Z5Q3	Uncharacterized protein.	Uncharacterized protein.	0.993
C3YYC3_BRAFL	C3XZ17_BRAFL	C3YYC3	C3XZ17	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
C3YYC3_BRAFL	C3YEB3_BRAFL	C3YYC3	C3YEB3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
C3YYC3_BRAFL	C3Z5Q3_BRAFL	C3YYC3	C3Z5Q3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
C3Z5Q3_BRAFL	C3XZ17_BRAFL	C3Z5Q3	C3XZ17	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
C3Z5Q3_BRAFL	C3YEB3_BRAFL	C3Z5Q3	C3YEB3	Uncharacterized protein.	Uncharacterized protein.	0.993
C3Z5Q3_BRAFL	C3YYC3_BRAFL	C3Z5Q3	C3YYC3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
C3Z8J0_BRAFL	C3XS07_BRAFL	C3Z8J0	C3XS07	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein.	0.457
C3ZIA7_BRAFL	C3Y2Q3_BRAFL	C3ZIA7	C3Y2Q3	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.584
C3ZIA7_BRAFL	C3Y332_BRAFL	C3ZIA7	C3Y332	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.708