(17 nodes) Positive regulation of DNA-templated transcription, elongation network (Branchiostoma floridae)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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Predicted Interactions

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Your Input:
	C3Z6M7_BRAFL	HHH_7 domain-containing protein. (944 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3Z749_BRAFL	Uncharacterized protein. (1464 aa)
	C3Z469_BRAFL	Uncharacterized protein. (579 aa)
	C3Z3T8_BRAFL	Uncharacterized protein; Belongs to the cyclin family. (751 aa)
	C3YW63_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
	C3YQI6_BRAFL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
	C3YQ98_BRAFL	Uncharacterized protein. (614 aa)
	C3YLD4_BRAFL	Uncharacterized protein. (1003 aa)
	C3YDW7_BRAFL	Uncharacterized protein. (946 aa)
	C3YDW0_BRAFL	Uncharacterized protein. (951 aa)
	C3YDJ1_BRAFL	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
	C3YD45_BRAFL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)
	C3Y921_BRAFL	Uncharacterized protein. (338 aa)
	C3Y3M9_BRAFL	PWWP domain-containing protein. (572 aa)
	C3Y1Y4_BRAFL	Death domain-containing protein. (561 aa)
	C3XSK0_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (257 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSK0_BRAFL	C3YD45_BRAFL	C3XSK0	C3YD45	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.621
C3XSK0_BRAFL	C3YDJ1_BRAFL	C3XSK0	C3YDJ1	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.923
C3XSK0_BRAFL	C3YDW0_BRAFL	C3XSK0	C3YDW0	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.893
C3XSK0_BRAFL	C3YDW7_BRAFL	C3XSK0	C3YDW7	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.893
C3XSK0_BRAFL	C3YLD4_BRAFL	C3XSK0	C3YLD4	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.836
C3XSK0_BRAFL	C3YQ98_BRAFL	C3XSK0	C3YQ98	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.946
C3XSK0_BRAFL	C3YQI6_BRAFL	C3XSK0	C3YQI6	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.723
C3XSK0_BRAFL	C3YW63_BRAFL	C3XSK0	C3YW63	CYCLIN domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.989
C3XSK0_BRAFL	C3Z3T8_BRAFL	C3XSK0	C3Z3T8	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.904
C3XSK0_BRAFL	C3Z6M7_BRAFL	C3XSK0	C3Z6M7	CYCLIN domain-containing protein; Belongs to the cyclin family.	HHH_7 domain-containing protein.	0.620
C3XSK0_BRAFL	C3ZG24_BRAFL	C3XSK0	C3ZG24	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.687
C3Y1Y4_BRAFL	C3Z469_BRAFL	C3Y1Y4	C3Z469	Death domain-containing protein.	Uncharacterized protein.	0.998
C3YD45_BRAFL	C3XSK0_BRAFL	C3YD45	C3XSK0	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.621
C3YD45_BRAFL	C3YDJ1_BRAFL	C3YD45	C3YDJ1	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.987
C3YD45_BRAFL	C3YDW0_BRAFL	C3YD45	C3YDW0	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.976
C3YD45_BRAFL	C3YDW7_BRAFL	C3YD45	C3YDW7	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.976
C3YD45_BRAFL	C3YLD4_BRAFL	C3YD45	C3YLD4	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.995
C3YD45_BRAFL	C3YQ98_BRAFL	C3YD45	C3YQ98	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein.	0.881
C3YD45_BRAFL	C3YW63_BRAFL	C3YD45	C3YW63	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.808
C3YD45_BRAFL	C3Z3T8_BRAFL	C3YD45	C3Z3T8	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	Uncharacterized protein; Belongs to the cyclin family.	0.722