(16 nodes) Receptor catabolic process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRV7_BRAFL	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1022 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YGR2_BRAFL	Uncharacterized protein. (416 aa)
	C3YUE5_BRAFL	Uncharacterized protein. (994 aa)
	C3YVP0_BRAFL	ZNRF_3_ecto domain-containing protein. (114 aa)
	C3YVP1_BRAFL	Uncharacterized protein. (57 aa)
	C3YW30_BRAFL	Uncharacterized protein; Belongs to the peptidase S8 family. (682 aa)
	C3YW31_BRAFL	Uncharacterized protein; Belongs to the peptidase S8 family. (697 aa)
	C3YY73_BRAFL	Uncharacterized protein. (66 aa)
	C3Z934_BRAFL	Uncharacterized protein. (123 aa)
	C3Z936_BRAFL	Uncharacterized protein. (365 aa)
	C3ZCE1_BRAFL	C-type lectin domain-containing protein; Belongs to the peptidase S8 family. (839 aa)
	C3ZE24_BRAFL	Uncharacterized protein. (303 aa)
	C3ZR37_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XYM7_BRAFL	C3YEM3_BRAFL	C3XYM7	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.986
C3XYM7_BRAFL	C3ZE24_BRAFL	C3XYM7	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.966
C3XYM7_BRAFL	C3ZYW7_BRAFL	C3XYM7	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3YEM3_BRAFL	C3XYM7_BRAFL	C3YEM3	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.986
C3YEM3_BRAFL	C3ZE24_BRAFL	C3YEM3	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.998
C3YEM3_BRAFL	C3ZYW7_BRAFL	C3YEM3	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.986
C3YGR2_BRAFL	C3Z936_BRAFL	C3YGR2	C3Z936	Uncharacterized protein.	Uncharacterized protein.	0.905
C3Z936_BRAFL	C3YGR2_BRAFL	C3Z936	C3YGR2	Uncharacterized protein.	Uncharacterized protein.	0.905
C3ZE24_BRAFL	C3XYM7_BRAFL	C3ZE24	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.966
C3ZE24_BRAFL	C3YEM3_BRAFL	C3ZE24	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.998
C3ZE24_BRAFL	C3ZYW7_BRAFL	C3ZE24	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.966
C3ZYW7_BRAFL	C3XYM7_BRAFL	C3ZYW7	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3ZYW7_BRAFL	C3YEM3_BRAFL	C3ZYW7	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.986
C3ZYW7_BRAFL	C3ZE24_BRAFL	C3ZYW7	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.966