(15 nodes) Positive regulation of RNA splicing network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y7T7_BRAFL	RRM domain-containing protein. (187 aa)
	C3Y4P7_BRAFL	Zpr1 domain-containing protein. (262 aa)
	C3ZZC8_BRAFL	Uncharacterized protein. (138 aa)
	C3Z7M6_BRAFL	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (524 aa)
	C3XPH0_BRAFL	Uncharacterized protein. (365 aa)
	C3XPP5_BRAFL	Uncharacterized protein. (321 aa)
	C3XPP6_BRAFL	Uncharacterized protein. (152 aa)
	C3XZZ5_BRAFL	Uncharacterized protein. (435 aa)
	C3ZES3_BRAFL	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1934 aa)
	C3XQU2_BRAFL	SKIP_SNW domain-containing protein. (543 aa)
	C3XWA2_BRAFL	Peptidase S59 domain-containing protein. (1834 aa)
	C3ZEK3_BRAFL	RRM domain-containing protein. (88 aa)
	C3YVN0_BRAFL	Uncharacterized protein. (511 aa)
	C3YC21_BRAFL	RRM domain-containing protein. (560 aa)
	C3Y7T8_BRAFL	RRM domain-containing protein. (183 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPH0_BRAFL	C3XQU2_BRAFL	C3XPH0	C3XQU2	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.890
C3XPH0_BRAFL	C3XZZ5_BRAFL	C3XPH0	C3XZZ5	Uncharacterized protein.	Uncharacterized protein.	0.908
C3XPH0_BRAFL	C3YC21_BRAFL	C3XPH0	C3YC21	Uncharacterized protein.	RRM domain-containing protein.	0.452
C3XPH0_BRAFL	C3YVN0_BRAFL	C3XPH0	C3YVN0	Uncharacterized protein.	Uncharacterized protein.	0.914
C3XPH0_BRAFL	C3Z7M6_BRAFL	C3XPH0	C3Z7M6	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.992
C3XPP5_BRAFL	C3Y7T7_BRAFL	C3XPP5	C3Y7T7	Uncharacterized protein.	RRM domain-containing protein.	0.472
C3XPP5_BRAFL	C3Y7T8_BRAFL	C3XPP5	C3Y7T8	Uncharacterized protein.	RRM domain-containing protein.	0.434
C3XPP5_BRAFL	C3ZEK3_BRAFL	C3XPP5	C3ZEK3	Uncharacterized protein.	RRM domain-containing protein.	0.699
C3XPP6_BRAFL	C3Y7T7_BRAFL	C3XPP6	C3Y7T7	Uncharacterized protein.	RRM domain-containing protein.	0.684
C3XPP6_BRAFL	C3Y7T8_BRAFL	C3XPP6	C3Y7T8	Uncharacterized protein.	RRM domain-containing protein.	0.459
C3XPP6_BRAFL	C3ZEK3_BRAFL	C3XPP6	C3ZEK3	Uncharacterized protein.	RRM domain-containing protein.	0.696
C3XQU2_BRAFL	C3XPH0_BRAFL	C3XQU2	C3XPH0	SKIP_SNW domain-containing protein.	Uncharacterized protein.	0.890
C3XQU2_BRAFL	C3XZZ5_BRAFL	C3XQU2	C3XZZ5	SKIP_SNW domain-containing protein.	Uncharacterized protein.	0.998
C3XQU2_BRAFL	C3YVN0_BRAFL	C3XQU2	C3YVN0	SKIP_SNW domain-containing protein.	Uncharacterized protein.	0.992
C3XQU2_BRAFL	C3Z7M6_BRAFL	C3XQU2	C3Z7M6	SKIP_SNW domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.464
C3XZZ5_BRAFL	C3XPH0_BRAFL	C3XZZ5	C3XPH0	Uncharacterized protein.	Uncharacterized protein.	0.908
C3XZZ5_BRAFL	C3XQU2_BRAFL	C3XZZ5	C3XQU2	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.998
C3XZZ5_BRAFL	C3YVN0_BRAFL	C3XZZ5	C3YVN0	Uncharacterized protein.	Uncharacterized protein.	0.994
C3XZZ5_BRAFL	C3Z7M6_BRAFL	C3XZZ5	C3Z7M6	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.477
C3Y7T7_BRAFL	C3XPP5_BRAFL	C3Y7T7	C3XPP5	RRM domain-containing protein.	Uncharacterized protein.	0.472