22 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YRW5_BRAFL	DTC domain-containing protein. (153 aa)
	C3YRW8_BRAFL	DTC domain-containing protein. (168 aa)
	C3YRX9_BRAFL	DTC domain-containing protein. (181 aa)
	C3YS13_BRAFL	RING-type domain-containing protein. (191 aa)
	C3YUP5_BRAFL	RING-type domain-containing protein. (184 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3XVI0_BRAFL	E3 ubiquitin protein ligase. (243 aa)
	C3XVI2_BRAFL	E3 ubiquitin protein ligase. (655 aa)
	C3Y3I9_BRAFL	RING-type domain-containing protein. (180 aa)
	C3Y3J1_BRAFL	RING-type domain-containing protein. (180 aa)
	C3Y3J4_BRAFL	RING-type domain-containing protein. (198 aa)
	C3Y416_BRAFL	DTC domain-containing protein. (154 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y5Q2_BRAFL	Uncharacterized protein. (1122 aa)
	C3Y5W8_BRAFL	Uncharacterized protein. (635 aa)
	C3YRX3_BRAFL	DTC domain-containing protein. (141 aa)
	C3YRX1_BRAFL	DTC domain-containing protein. (152 aa)
	C3Y5X0_BRAFL	Macro domain-containing protein. (970 aa)
	C3YS35_BRAFL	RING-type domain-containing protein. (193 aa)
	C3YS05_BRAFL	RING-type domain-containing protein. (188 aa)
	C3Y8U1_BRAFL	RING-type domain-containing protein. (178 aa)
	C3YRW4_BRAFL	RING-type domain-containing protein. (190 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVI0_BRAFL	C3XVI2_BRAFL	C3XVI0	C3XVI2	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.965
C3XVI0_BRAFL	C3Y529_BRAFL	C3XVI0	C3Y529	E3 ubiquitin protein ligase.	TPR_REGION domain-containing protein.	0.702
C3XVI0_BRAFL	C3ZG24_BRAFL	C3XVI0	C3ZG24	E3 ubiquitin protein ligase.	Uncharacterized protein.	0.772
C3XVI2_BRAFL	C3XVI0_BRAFL	C3XVI2	C3XVI0	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.965
C3XVI2_BRAFL	C3Y529_BRAFL	C3XVI2	C3Y529	E3 ubiquitin protein ligase.	TPR_REGION domain-containing protein.	0.702
C3XVI2_BRAFL	C3ZG24_BRAFL	C3XVI2	C3ZG24	E3 ubiquitin protein ligase.	Uncharacterized protein.	0.772
C3Y529_BRAFL	C3XVI0_BRAFL	C3Y529	C3XVI0	TPR_REGION domain-containing protein.	E3 ubiquitin protein ligase.	0.702
C3Y529_BRAFL	C3XVI2_BRAFL	C3Y529	C3XVI2	TPR_REGION domain-containing protein.	E3 ubiquitin protein ligase.	0.702
C3Y529_BRAFL	C3ZG24_BRAFL	C3Y529	C3ZG24	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3YRW4_BRAFL	C3YRW5_BRAFL	C3YRW4	C3YRW5	RING-type domain-containing protein.	DTC domain-containing protein.	0.902
C3YRW4_BRAFL	C3YS35_BRAFL	C3YRW4	C3YS35	RING-type domain-containing protein.	RING-type domain-containing protein.	0.902
C3YRW5_BRAFL	C3YRW4_BRAFL	C3YRW5	C3YRW4	DTC domain-containing protein.	RING-type domain-containing protein.	0.902
C3YRW5_BRAFL	C3YS35_BRAFL	C3YRW5	C3YS35	DTC domain-containing protein.	RING-type domain-containing protein.	0.903
C3YS35_BRAFL	C3YRW4_BRAFL	C3YS35	C3YRW4	RING-type domain-containing protein.	RING-type domain-containing protein.	0.902
C3YS35_BRAFL	C3YRW5_BRAFL	C3YS35	C3YRW5	RING-type domain-containing protein.	DTC domain-containing protein.	0.903
C3ZG24_BRAFL	C3XVI0_BRAFL	C3ZG24	C3XVI0	Uncharacterized protein.	E3 ubiquitin protein ligase.	0.772
C3ZG24_BRAFL	C3XVI2_BRAFL	C3ZG24	C3XVI2	Uncharacterized protein.	E3 ubiquitin protein ligase.	0.772
C3ZG24_BRAFL	C3Y529_BRAFL	C3ZG24	C3Y529	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999