(23 nodes) Regulation of transcription elongation from RNA polymerase II promoter network (Branchiostoma floridae)

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	C3XSK0_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (257 aa)
	C3YZS4_BRAFL	Uncharacterized protein. (122 aa)
	C3YZS6_BRAFL	Uncharacterized protein. (425 aa)
	C3Z313_BRAFL	HDAg domain-containing protein. (459 aa)
	C3Z3T8_BRAFL	Uncharacterized protein; Belongs to the cyclin family. (751 aa)
	C3Z6M7_BRAFL	HHH_7 domain-containing protein. (944 aa)
	C3Z749_BRAFL	Uncharacterized protein. (1464 aa)
	C3Z8L5_BRAFL	Uncharacterized protein. (559 aa)
	C3ZET3_BRAFL	RING-type domain-containing protein. (121 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3YW63_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
	C3YQI6_BRAFL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
	C3YQ98_BRAFL	Uncharacterized protein. (614 aa)
	C3YLD4_BRAFL	Uncharacterized protein. (1003 aa)
	C3YGP3_BRAFL	WD_REPEATS_REGION domain-containing protein. (657 aa)
	C3YGG3_BRAFL	Uncharacterized protein. (582 aa)
	C3YDJ1_BRAFL	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
	C3YD45_BRAFL	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)
	C3YC02_BRAFL	EAF domain-containing protein. (256 aa)
	C3Y921_BRAFL	Uncharacterized protein. (338 aa)
	C3Y3M9_BRAFL	PWWP domain-containing protein. (572 aa)
	C3Y2N3_BRAFL	Uncharacterized protein. (585 aa)
	C3Y212_BRAFL	Deacetylase sirtuin-type domain-containing protein. (414 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSK0_BRAFL	C3Y2N3_BRAFL	C3XSK0	C3Y2N3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.866
C3XSK0_BRAFL	C3YC02_BRAFL	C3XSK0	C3YC02	CYCLIN domain-containing protein; Belongs to the cyclin family.	EAF domain-containing protein.	0.864
C3XSK0_BRAFL	C3YD45_BRAFL	C3XSK0	C3YD45	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.621
C3XSK0_BRAFL	C3YDJ1_BRAFL	C3XSK0	C3YDJ1	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.923
C3XSK0_BRAFL	C3YGG3_BRAFL	C3XSK0	C3YGG3	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.832
C3XSK0_BRAFL	C3YLD4_BRAFL	C3XSK0	C3YLD4	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.836
C3XSK0_BRAFL	C3YQ98_BRAFL	C3XSK0	C3YQ98	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.946
C3XSK0_BRAFL	C3YQI6_BRAFL	C3XSK0	C3YQI6	CYCLIN domain-containing protein; Belongs to the cyclin family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.723
C3XSK0_BRAFL	C3YW63_BRAFL	C3XSK0	C3YW63	CYCLIN domain-containing protein; Belongs to the cyclin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.989
C3XSK0_BRAFL	C3Z313_BRAFL	C3XSK0	C3Z313	CYCLIN domain-containing protein; Belongs to the cyclin family.	HDAg domain-containing protein.	0.843
C3XSK0_BRAFL	C3Z3T8_BRAFL	C3XSK0	C3Z3T8	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein; Belongs to the cyclin family.	0.904
C3XSK0_BRAFL	C3Z6M7_BRAFL	C3XSK0	C3Z6M7	CYCLIN domain-containing protein; Belongs to the cyclin family.	HHH_7 domain-containing protein.	0.620
C3XSK0_BRAFL	C3ZG24_BRAFL	C3XSK0	C3ZG24	CYCLIN domain-containing protein; Belongs to the cyclin family.	Uncharacterized protein.	0.687
C3Y2N3_BRAFL	C3XSK0_BRAFL	C3Y2N3	C3XSK0	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.866
C3Y2N3_BRAFL	C3YC02_BRAFL	C3Y2N3	C3YC02	Uncharacterized protein.	EAF domain-containing protein.	0.827
C3Y2N3_BRAFL	C3YD45_BRAFL	C3Y2N3	C3YD45	Uncharacterized protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.595
C3Y2N3_BRAFL	C3YDJ1_BRAFL	C3Y2N3	C3YDJ1	Uncharacterized protein.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.964
C3Y2N3_BRAFL	C3YGG3_BRAFL	C3Y2N3	C3YGG3	Uncharacterized protein.	Uncharacterized protein.	0.995
C3Y2N3_BRAFL	C3YLD4_BRAFL	C3Y2N3	C3YLD4	Uncharacterized protein.	Uncharacterized protein.	0.788
C3Y2N3_BRAFL	C3YQ98_BRAFL	C3Y2N3	C3YQ98	Uncharacterized protein.	Uncharacterized protein.	0.870