(34 nodes) Protein localization to chromosome network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YDF6_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3XPW3_BRAFL	Uncharacterized protein. (484 aa)
	C3XRW7_BRAFL	Uncharacterized protein. (1231 aa)
	C3XTK2_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	C3XTY8_BRAFL	Uncharacterized protein. (581 aa)
	C3XYZ6_BRAFL	BUB1 N-terminal domain-containing protein. (234 aa)
	C3XZX7_BRAFL	WAPL domain-containing protein. (1304 aa)
	C3Y028_BRAFL	Uncharacterized protein. (412 aa)
	C3Y1G8_BRAFL	Uncharacterized protein. (540 aa)
	C3Y429_BRAFL	Uncharacterized protein. (1173 aa)
	C3Y5S4_BRAFL	Uncharacterized protein. (334 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3Y6B5_BRAFL	Uncharacterized protein. (1548 aa)
	C3YD16_BRAFL	Telo_bind domain-containing protein. (396 aa)
	C3YDS9_BRAFL	Uncharacterized protein. (326 aa)
	C3YKL1_BRAFL	AlbA_2 domain-containing protein. (1649 aa)
	C3YZR1_BRAFL	Uncharacterized protein. (490 aa)
	C3Z2P3_BRAFL	Poly [ADP-ribose] polymerase. (516 aa)
	C3Z2R2_BRAFL	DUF3715 domain-containing protein. (154 aa)
	C3Z3N5_BRAFL	Spc7 domain-containing protein. (1713 aa)
	C3Z479_BRAFL	WD_REPEATS_REGION domain-containing protein. (742 aa)
	C3Z5I9_BRAFL	Macro domain-containing protein; Belongs to the histone H2A family. (383 aa)
	C3Z8A2_BRAFL	RB_A domain-containing protein. (305 aa)
	C3Z9I6_BRAFL	Uncharacterized protein. (643 aa)
	C3Z9X0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2531 aa)
	C3ZEP2_BRAFL	Uncharacterized protein. (344 aa)
	C3ZHN8_BRAFL	G-patch domain-containing protein. (364 aa)
	C3ZHV8_BRAFL	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (265 aa)
	C3ZNI8_BRAFL	Uncharacterized protein. (297 aa)
	C3ZQ21_BRAFL	HTH myb-type domain-containing protein. (55 aa)
	C3ZQJ9_BRAFL	Uncharacterized protein. (707 aa)
	C3ZV87_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3ZVX7_BRAFL	Nipped-B protein. (1493 aa)
	C3ZXT7_BRAFL	Uncharacterized protein. (572 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPW3_BRAFL	C3XYZ6_BRAFL	C3XPW3	C3XYZ6	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.615
C3XPW3_BRAFL	C3Y5S4_BRAFL	C3XPW3	C3Y5S4	Uncharacterized protein.	Uncharacterized protein.	0.590
C3XRW7_BRAFL	C3XYZ6_BRAFL	C3XRW7	C3XYZ6	Uncharacterized protein.	BUB1 N-terminal domain-containing protein.	0.855
C3XRW7_BRAFL	C3Y5S4_BRAFL	C3XRW7	C3Y5S4	Uncharacterized protein.	Uncharacterized protein.	0.585
C3XRW7_BRAFL	C3ZQJ9_BRAFL	C3XRW7	C3ZQJ9	Uncharacterized protein.	Uncharacterized protein.	0.998
C3XTK2_BRAFL	C3YDS9_BRAFL	C3XTK2	C3YDS9	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.581
C3XTK2_BRAFL	C3Z3N5_BRAFL	C3XTK2	C3Z3N5	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Spc7 domain-containing protein.	0.773
C3XTK2_BRAFL	C3Z9X0_BRAFL	C3XTK2	C3Z9X0	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.663
C3XTK2_BRAFL	C3ZHV8_BRAFL	C3XTK2	C3ZHV8	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.816
C3XYZ6_BRAFL	C3XPW3_BRAFL	C3XYZ6	C3XPW3	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.615
C3XYZ6_BRAFL	C3XRW7_BRAFL	C3XYZ6	C3XRW7	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.855
C3XYZ6_BRAFL	C3Y5S4_BRAFL	C3XYZ6	C3Y5S4	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.993
C3XYZ6_BRAFL	C3Z3N5_BRAFL	C3XYZ6	C3Z3N5	BUB1 N-terminal domain-containing protein.	Spc7 domain-containing protein.	0.979
C3XYZ6_BRAFL	C3ZQJ9_BRAFL	C3XYZ6	C3ZQJ9	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.771
C3XYZ6_BRAFL	C3ZXT7_BRAFL	C3XYZ6	C3ZXT7	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.444
C3XZX7_BRAFL	C3Y1G8_BRAFL	C3XZX7	C3Y1G8	WAPL domain-containing protein.	Uncharacterized protein.	0.902
C3XZX7_BRAFL	C3YKL1_BRAFL	C3XZX7	C3YKL1	WAPL domain-containing protein.	AlbA_2 domain-containing protein.	0.785
C3XZX7_BRAFL	C3Z9I6_BRAFL	C3XZX7	C3Z9I6	WAPL domain-containing protein.	Uncharacterized protein.	0.785
C3XZX7_BRAFL	C3ZVX7_BRAFL	C3XZX7	C3ZVX7	WAPL domain-containing protein.	Nipped-B protein.	0.935
C3Y1G8_BRAFL	C3XZX7_BRAFL	C3Y1G8	C3XZX7	Uncharacterized protein.	WAPL domain-containing protein.	0.902