(110 nodes) Protein localization to nucleus network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YVL3_BRAFL	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (318 aa)
	C3YVI5_BRAFL	Importin N-terminal domain-containing protein. (1031 aa)
	C3YV85_BRAFL	Uncharacterized protein. (699 aa)
	C3YU25_BRAFL	Uncharacterized protein. (568 aa)
	C3YTT7_BRAFL	Uncharacterized protein. (376 aa)
	C3YTT1_BRAFL	Uncharacterized protein. (324 aa)
	C3YQX9_BRAFL	XPA_C domain-containing protein. (259 aa)
	C3YQ40_BRAFL	IBB domain-containing protein. (287 aa)
	C3YPS8_BRAFL	Uncharacterized protein. (712 aa)
	C3YM21_BRAFL	Uncharacterized protein. (1384 aa)
	C3YLI3_BRAFL	PHD-type domain-containing protein. (1052 aa)
	C3YJ30_BRAFL	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (758 aa)
	C3YJ29_BRAFL	Uncharacterized protein. (131 aa)
	C3YI32_BRAFL	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (263 aa)
	C3YH63_BRAFL	Uncharacterized protein. (215 aa)
	C3YGI2_BRAFL	Importin N-terminal domain-containing protein. (1022 aa)
	C3YFM0_BRAFL	BEN domain-containing protein. (501 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YE60_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YE52_BRAFL	Costars domain-containing protein. (155 aa)
	C3YE46_BRAFL	Importin N-terminal domain-containing protein. (951 aa)
	C3YE41_BRAFL	Costars domain-containing protein. (155 aa)
	C3YCP5_BRAFL	Uncharacterized protein. (1057 aa)
	C3YAY4_BRAFL	Uncharacterized protein. (230 aa)
	C3YAA1_BRAFL	Uncharacterized protein. (521 aa)
	C3Y953_BRAFL	SUN domain-containing protein. (1111 aa)
	C3Y917_BRAFL	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (750 aa)
	C3Y8J6_BRAFL	NTF2 domain-containing protein. (124 aa)
	C3Y5D8_BRAFL	Uncharacterized protein. (1346 aa)
	C3Y4R0_BRAFL	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (167 aa)
	C3Y4F4_BRAFL	Uncharacterized protein. (676 aa)
	C3Y3D6_BRAFL	Nsp1_C domain-containing protein. (421 aa)
	C3Y3C0_BRAFL	NTF2 domain-containing protein. (135 aa)
	C3Y306_BRAFL	Uncharacterized protein. (543 aa)
	C3Y2Z1_BRAFL	GPS domain-containing protein. (3627 aa)
	C3Y253_BRAFL	Uncharacterized protein. (455 aa)
	C3Y1T5_BRAFL	Importin N-terminal domain-containing protein. (953 aa)
	C3Y1R0_BRAFL	Spatacsin_C domain-containing protein. (1876 aa)
	C3Y1B7_BRAFL	Uncharacterized protein. (1507 aa)
	C3Y0K9_BRAFL	Uncharacterized protein. (169 aa)
	C3Y073_BRAFL	Importin N-terminal domain-containing protein. (1069 aa)
	C3XXY8_BRAFL	Importin N-terminal domain-containing protein. (818 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3XWA2_BRAFL	Peptidase S59 domain-containing protein. (1834 aa)
	C3XVY7_BRAFL	CW-type domain-containing protein. (465 aa)
	C3XVK6_BRAFL	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (221 aa)
	C3XTJ8_BRAFL	Importin subunit alpha; Belongs to the importin alpha family. (512 aa)
	C3XRH9_BRAFL	Nucleoporin_C domain-containing protein. (822 aa)
	C3XPY8_BRAFL	Uncharacterized protein. (1177 aa)
	Msx	Muscle segment homeobox. (275 aa)
	C4A119_BRAFL	Uncharacterized protein. (414 aa)
	C4A0W8_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)
	C3ZZL1_BRAFL	Uncharacterized protein. (489 aa)
	C3ZZH4_BRAFL	Uncharacterized protein. (541 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)
	C3ZY05_BRAFL	Importin N-terminal domain-containing protein. (742 aa)
	C3ZXL7_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (593 aa)
	C3ZWP7_BRAFL	Uncharacterized protein. (489 aa)
	C3ZWP4_BRAFL	Uncharacterized protein. (137 aa)
	C3ZVA4_BRAFL	Uncharacterized protein. (556 aa)
	C3ZV81_BRAFL	CRAL-TRIO domain-containing protein. (1389 aa)
	C3ZV77_BRAFL	Ras-GAP domain-containing protein. (1311 aa)
	C3ZTW1_BRAFL	Smoothend-like protein protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1250 aa)
	C3ZT43_BRAFL	RRP7 domain-containing protein. (134 aa)
	C3ZRP4_BRAFL	BTP domain-containing protein. (281 aa)
	C3ZRE8_BRAFL	Uncharacterized protein. (540 aa)
	C3ZR37_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	C3ZQV8_BRAFL	RanBD1 domain-containing protein. (130 aa)
	C3ZQG4_BRAFL	Uncharacterized protein. (183 aa)
	C3ZP64_BRAFL	Uncharacterized protein. (1316 aa)
	C3ZP63_BRAFL	Uncharacterized protein. (824 aa)
	C3ZP40_BRAFL	Uncharacterized protein. (171 aa)
	C3ZMW0_BRAFL	Uncharacterized protein. (617 aa)
	C3ZMA6_BRAFL	Uncharacterized protein. (191 aa)
	C3ZM42_BRAFL	Importin subunit alpha; Belongs to the importin alpha family. (527 aa)
	C3ZM41_BRAFL	Brix domain-containing protein. (120 aa)
	C3ZM40_BRAFL	Brix domain-containing protein. (311 aa)
	C3ZK41_BRAFL	RanBD1 domain-containing protein. (358 aa)
	C3ZJ96_BRAFL	Importin N-terminal domain-containing protein. (934 aa)
	C3ZHN8_BRAFL	G-patch domain-containing protein. (364 aa)
	C3ZF60_BRAFL	WD_REPEATS_REGION domain-containing protein. (434 aa)
	C3ZF25_BRAFL	Importin N-terminal domain-containing protein. (969 aa)
	C3ZEZ4_BRAFL	Uncharacterized protein. (3724 aa)
	C3ZEZ0_BRAFL	RanBD1 domain-containing protein. (490 aa)
	C3ZEG0_BRAFL	Importin subunit alpha; Belongs to the importin alpha family. (494 aa)
	C3ZBK8_BRAFL	DUF775 domain-containing protein. (196 aa)
	C3ZBF7_BRAFL	Nuclear pore protein. (815 aa)
	C3ZAI1_BRAFL	Uncharacterized protein. (181 aa)
	C3ZAI0_BRAFL	Uncharacterized protein. (206 aa)
	C3ZAH8_BRAFL	Uncharacterized protein. (2208 aa)
	C3Z810_BRAFL	Uncharacterized protein. (1766 aa)
	C3Z7Y3_BRAFL	Torsin. (348 aa)
	C3Z7D9_BRAFL	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (336 aa)
	C3Z791_BRAFL	Rap-GAP domain-containing protein. (1369 aa)
	C3Z790_BRAFL	Uncharacterized protein. (674 aa)
	C3Z6D4_BRAFL	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (277 aa)
	C3Z656_BRAFL	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family. (277 aa)
	C3Z4Y9_BRAFL	Matrin-type domain-containing protein. (1137 aa)
	C3Z4P2_BRAFL	Inhibitor of growth protein. (281 aa)
	C3Z4B2_BRAFL	Uncharacterized protein. (733 aa)
	C3Z3J7_BRAFL	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (316 aa)
	C3Z2S7_BRAFL	Uncharacterized protein. (195 aa)
	C3Z2E7_BRAFL	Muscle-specific homeobox-like protein. (307 aa)
	C3Z2D6_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	C3Z1H6_BRAFL	SEFIR domain-containing protein. (238 aa)
	C3Z1H5_BRAFL	SEFIR domain-containing protein. (163 aa)
	C3YZV2_BRAFL	WD_REPEATS_REGION domain-containing protein. (409 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3YXN5_BRAFL	Uncharacterized protein. (227 aa)
	C3YW57_BRAFL	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (504 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPY8_BRAFL	C3XVK6_BRAFL	C3XPY8	C3XVK6	Uncharacterized protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.906
C3XPY8_BRAFL	C3Y2Z1_BRAFL	C3XPY8	C3Y2Z1	Uncharacterized protein.	GPS domain-containing protein.	0.906
C3XPY8_BRAFL	C3Y8J6_BRAFL	C3XPY8	C3Y8J6	Uncharacterized protein.	NTF2 domain-containing protein.	0.482
C3XPY8_BRAFL	C3ZEZ0_BRAFL	C3XPY8	C3ZEZ0	Uncharacterized protein.	RanBD1 domain-containing protein.	0.498
C3XPY8_BRAFL	C3ZEZ4_BRAFL	C3XPY8	C3ZEZ4	Uncharacterized protein.	Uncharacterized protein.	0.498
C3XPY8_BRAFL	C3ZQV8_BRAFL	C3XPY8	C3ZQV8	Uncharacterized protein.	RanBD1 domain-containing protein.	0.498
C3XRH9_BRAFL	C3XVK6_BRAFL	C3XRH9	C3XVK6	Nucleoporin_C domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.615
C3XRH9_BRAFL	C3XWA2_BRAFL	C3XRH9	C3XWA2	Nucleoporin_C domain-containing protein.	Peptidase S59 domain-containing protein.	0.998
C3XRH9_BRAFL	C3Y1B7_BRAFL	C3XRH9	C3Y1B7	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.987
C3XRH9_BRAFL	C3Y2Z1_BRAFL	C3XRH9	C3Y2Z1	Nucleoporin_C domain-containing protein.	GPS domain-containing protein.	0.615
C3XRH9_BRAFL	C3Y3C0_BRAFL	C3XRH9	C3Y3C0	Nucleoporin_C domain-containing protein.	NTF2 domain-containing protein.	0.701
C3XRH9_BRAFL	C3Y3D6_BRAFL	C3XRH9	C3Y3D6	Nucleoporin_C domain-containing protein.	Nsp1_C domain-containing protein.	0.976
C3XRH9_BRAFL	C3Y5D8_BRAFL	C3XRH9	C3Y5D8	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.717
C3XRH9_BRAFL	C3Y917_BRAFL	C3XRH9	C3Y917	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
C3XRH9_BRAFL	C3Y953_BRAFL	C3XRH9	C3Y953	Nucleoporin_C domain-containing protein.	SUN domain-containing protein.	0.469
C3XRH9_BRAFL	C3YJ29_BRAFL	C3XRH9	C3YJ29	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.989
C3XRH9_BRAFL	C3YJ30_BRAFL	C3XRH9	C3YJ30	Nucleoporin_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.995
C3XRH9_BRAFL	C3YM21_BRAFL	C3XRH9	C3YM21	Nucleoporin_C domain-containing protein.	Uncharacterized protein.	0.993
C3XRH9_BRAFL	C3YQ40_BRAFL	C3XRH9	C3YQ40	Nucleoporin_C domain-containing protein.	IBB domain-containing protein.	0.501
C3XRH9_BRAFL	C3YVL3_BRAFL	C3XRH9	C3YVL3	Nucleoporin_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999