(60 nodes) Response to tumor necrosis factor network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XXG7_BRAFL	Uncharacterized protein; Belongs to the acid ceramidase family. (315 aa)
	C3XWH9_BRAFL	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (226 aa)
	C4A079_BRAFL	R3H domain-containing protein. (58 aa)
	C3ZYU7_BRAFL	MATH domain-containing protein. (107 aa)
	C3ZY01_BRAFL	Uncharacterized protein. (425 aa)
	C3ZXG1_BRAFL	Uncharacterized protein. (122 aa)
	C3ZV97_BRAFL	Endo/exonuclease/phosphatase domain-containing protein. (559 aa)
	C3ZQU2_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (739 aa)
	C3ZPE4_BRAFL	Protein kinase domain-containing protein. (427 aa)
	C3ZN65_BRAFL	Uncharacterized protein. (147 aa)
	C3ZKZ3_BRAFL	Uncharacterized protein. (1638 aa)
	C3ZKZ1_BRAFL	Uncharacterized protein. (516 aa)
	C3ZJF8_BRAFL	Uncharacterized protein. (565 aa)
	C3ZH16_BRAFL	Uncharacterized protein. (473 aa)
	C3ZG42_BRAFL	Uncharacterized protein. (482 aa)
	C3ZG40_BRAFL	Uncharacterized protein. (503 aa)
	C3ZG39_BRAFL	Uncharacterized protein. (549 aa)
	C3ZG38_BRAFL	MATH domain-containing protein. (373 aa)
	C3ZG37_BRAFL	Uncharacterized protein. (631 aa)
	C3ZG35_BRAFL	Uncharacterized protein. (658 aa)
	C3ZG34_BRAFL	Uncharacterized protein. (552 aa)
	C3ZG33_BRAFL	MATH domain-containing protein. (467 aa)
	C3ZG31_BRAFL	Uncharacterized protein. (474 aa)
	C3ZG30_BRAFL	MATH domain-containing protein. (353 aa)
	C3ZEB9_BRAFL	PID domain-containing protein. (70 aa)
	C3Z9W3_BRAFL	Cactin_mid domain-containing protein. (207 aa)
	C3Z9D5_BRAFL	DUF953 domain-containing protein. (113 aa)
	C3Z946_BRAFL	Uncharacterized protein. (310 aa)
	C3Z388_BRAFL	Metallophos domain-containing protein. (425 aa)
	C3Z378_BRAFL	Metallophos domain-containing protein. (430 aa)
	C3Z2T5_BRAFL	Uncharacterized protein. (454 aa)
	C3Z1H6_BRAFL	SEFIR domain-containing protein. (238 aa)
	C3Z1H5_BRAFL	SEFIR domain-containing protein. (163 aa)
	C3Z1F1_BRAFL	Uncharacterized protein. (468 aa)
	C3Z0K3_BRAFL	Uncharacterized protein. (1018 aa)
	C3Z0K2_BRAFL	Uncharacterized protein. (664 aa)
	C3YZA6_BRAFL	Uncharacterized protein. (700 aa)
	C3YYI8_BRAFL	UBA domain-containing protein. (210 aa)
	C3YW39_BRAFL	Uncharacterized protein. (2614 aa)
	C3YVL1_BRAFL	GTP_cyclohydroI domain-containing protein. (180 aa)
	C3YRU2_BRAFL	Protein kinase domain-containing protein. (168 aa)
	C3YR22_BRAFL	TNFR-Cys domain-containing protein. (111 aa)
	C3YQ04_BRAFL	Glucosylceramidase. (292 aa)
	C3YQ03_BRAFL	Glucosylceramidase. (644 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YJ83_BRAFL	RING-type domain-containing protein. (180 aa)
	C3YI94_BRAFL	Uncharacterized protein. (101 aa)
	C3YFT5_BRAFL	Protein kinase domain-containing protein. (755 aa)
	C3YEQ1_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (476 aa)
	C3YAX5_BRAFL	COMM domain-containing protein. (202 aa)
	C3Y8G6_BRAFL	Death domain-containing protein. (1064 aa)
	C3Y759_BRAFL	Pep_M12B_propep domain-containing protein. (239 aa)
	C3Y4J8_BRAFL	Uncharacterized protein. (876 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3Y1F9_BRAFL	Uncharacterized protein. (1907 aa)
	C3Y0R3_BRAFL	Uncharacterized protein. (532 aa)
	C3XZ05_BRAFL	GTP_cyclohydroI domain-containing protein. (180 aa)
	C3XYF5_BRAFL	Uncharacterized protein. (424 aa)
	C3XYF4_BRAFL	TNFR-Cys domain-containing protein. (157 aa)
	C3XYF2_BRAFL	TNFR-Cys domain-containing protein. (206 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XZ05_BRAFL	C3YVL1_BRAFL	C3XZ05	C3YVL1	GTP_cyclohydroI domain-containing protein.	GTP_cyclohydroI domain-containing protein.	0.900
C3Y0R3_BRAFL	C3Y8G6_BRAFL	C3Y0R3	C3Y8G6	Uncharacterized protein.	Death domain-containing protein.	0.623
C3Y0R3_BRAFL	C3YEQ1_BRAFL	C3Y0R3	C3YEQ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.527
C3Y0R3_BRAFL	C3YFT5_BRAFL	C3Y0R3	C3YFT5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.489
C3Y0R3_BRAFL	C3YI94_BRAFL	C3Y0R3	C3YI94	Uncharacterized protein.	Uncharacterized protein.	0.462
C3Y0R3_BRAFL	C3YJ83_BRAFL	C3Y0R3	C3YJ83	Uncharacterized protein.	RING-type domain-containing protein.	0.462
C3Y0R3_BRAFL	C3Z1F1_BRAFL	C3Y0R3	C3Z1F1	Uncharacterized protein.	Uncharacterized protein.	0.723
C3Y0R3_BRAFL	C3Z1H5_BRAFL	C3Y0R3	C3Z1H5	Uncharacterized protein.	SEFIR domain-containing protein.	0.455
C3Y0R3_BRAFL	C3Z1H6_BRAFL	C3Y0R3	C3Z1H6	Uncharacterized protein.	SEFIR domain-containing protein.	0.455
C3Y0R3_BRAFL	C3Z946_BRAFL	C3Y0R3	C3Z946	Uncharacterized protein.	Uncharacterized protein.	0.401
C3Y0R3_BRAFL	C3ZG31_BRAFL	C3Y0R3	C3ZG31	Uncharacterized protein.	Uncharacterized protein.	0.485
C3Y0R3_BRAFL	C3ZG34_BRAFL	C3Y0R3	C3ZG34	Uncharacterized protein.	Uncharacterized protein.	0.491
C3Y0R3_BRAFL	C3ZG35_BRAFL	C3Y0R3	C3ZG35	Uncharacterized protein.	Uncharacterized protein.	0.495
C3Y0R3_BRAFL	C3ZG37_BRAFL	C3Y0R3	C3ZG37	Uncharacterized protein.	Uncharacterized protein.	0.491
C3Y0R3_BRAFL	C3ZG38_BRAFL	C3Y0R3	C3ZG38	Uncharacterized protein.	MATH domain-containing protein.	0.483
C3Y0R3_BRAFL	C3ZG39_BRAFL	C3Y0R3	C3ZG39	Uncharacterized protein.	Uncharacterized protein.	0.490
C3Y0R3_BRAFL	C3ZG40_BRAFL	C3Y0R3	C3ZG40	Uncharacterized protein.	Uncharacterized protein.	0.490
C3Y0R3_BRAFL	C3ZG42_BRAFL	C3Y0R3	C3ZG42	Uncharacterized protein.	Uncharacterized protein.	0.485
C3Y0R3_BRAFL	C3ZH16_BRAFL	C3Y0R3	C3ZH16	Uncharacterized protein.	Uncharacterized protein.	0.467
C3Y0R3_BRAFL	C3ZN65_BRAFL	C3Y0R3	C3ZN65	Uncharacterized protein.	Uncharacterized protein.	0.462