(27 nodes) Cellular carbohydrate biosynthetic process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZPF5_BRAFL	Uncharacterized protein. (304 aa)
	C3Y0B9_BRAFL	Uncharacterized protein. (229 aa)
	C3Y4B2_BRAFL	Inos-1-P_synth domain-containing protein. (552 aa)
	C3Y5B0_BRAFL	Inos-1-P_synth domain-containing protein. (492 aa)
	C3Y744_BRAFL	Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (595 aa)
	Slc6a15	Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (733 aa)
	C3YFU1_BRAFL	Sulfotransferase; Belongs to the sulfotransferase 1 family. (510 aa)
	C3YID9_BRAFL	Uncharacterized protein. (1932 aa)
	C3YIV5_BRAFL	Aminotran_1_2 domain-containing protein. (412 aa)
	C3YYV7_BRAFL	Glyco_transf_20 domain-containing protein. (488 aa)
	C3Z103_BRAFL	Inositol-1-monophosphatase. (274 aa)
	C3Z105_BRAFL	Inositol-1-monophosphatase. (284 aa)
	C3Z5S9_BRAFL	Aamy domain-containing protein. (669 aa)
	C3Z6E5_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (386 aa)
	C3Z920_BRAFL	Inositol-1-monophosphatase. (268 aa)
	C3ZAU8_BRAFL	Uncharacterized protein. (623 aa)
	C3XRT4_BRAFL	RmlD_sub_bind domain-containing protein. (493 aa)
	C3ZE63_BRAFL	CBM20 domain-containing protein. (316 aa)
	C3ZKB8_BRAFL	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan. (806 aa)
	C3ZNB3_BRAFL	Uncharacterized protein. (539 aa)
	C3ZNB5_BRAFL	Uncharacterized protein. (621 aa)
	C3ZWX3_BRAFL	Uncharacterized protein. (501 aa)
	C3ZWY6_BRAFL	Uncharacterized protein. (564 aa)
	C3ZWY7_BRAFL	Uncharacterized protein. (563 aa)
	C3ZWY8_BRAFL	Uncharacterized protein. (563 aa)
	C4A0L0_BRAFL	Uncharacterized protein. (418 aa)
	C4A0L1_BRAFL	Uncharacterized protein. (332 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRT4_BRAFL	C3ZKB8_BRAFL	C3XRT4	C3ZKB8	RmlD_sub_bind domain-containing protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.527
C3Y4B2_BRAFL	C3Z103_BRAFL	C3Y4B2	C3Z103	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.958
C3Y4B2_BRAFL	C3Z105_BRAFL	C3Y4B2	C3Z105	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.958
C3Y4B2_BRAFL	C3Z920_BRAFL	C3Y4B2	C3Z920	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.958
C3Y5B0_BRAFL	C3Z103_BRAFL	C3Y5B0	C3Z103	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.598
C3Y5B0_BRAFL	C3Z105_BRAFL	C3Y5B0	C3Z105	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.598
C3Y5B0_BRAFL	C3Z920_BRAFL	C3Y5B0	C3Z920	Inos-1-P_synth domain-containing protein.	Inositol-1-monophosphatase.	0.598
C3Y744_BRAFL	C3YFU1_BRAFL	C3Y744	C3YFU1	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.408
C3YFU1_BRAFL	C3Y744_BRAFL	C3YFU1	C3Y744	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.408
C3YFU1_BRAFL	C3ZPF5_BRAFL	C3YFU1	C3ZPF5	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uncharacterized protein.	0.602
C3YFU1_BRAFL	Slc6a15	C3YFU1	C3Y7H0	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.408
C3YID9_BRAFL	C3YYV7_BRAFL	C3YID9	C3YYV7	Uncharacterized protein.	Glyco_transf_20 domain-containing protein.	0.501
C3YID9_BRAFL	C3Z5S9_BRAFL	C3YID9	C3Z5S9	Uncharacterized protein.	Aamy domain-containing protein.	0.913
C3YID9_BRAFL	C3ZKB8_BRAFL	C3YID9	C3ZKB8	Uncharacterized protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.867
C3YID9_BRAFL	C4A0L1_BRAFL	C3YID9	C4A0L1	Uncharacterized protein.	Uncharacterized protein.	0.890
C3YIV5_BRAFL	C3ZAU8_BRAFL	C3YIV5	C3ZAU8	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.839
C3YYV7_BRAFL	C3YID9_BRAFL	C3YYV7	C3YID9	Glyco_transf_20 domain-containing protein.	Uncharacterized protein.	0.501
C3YYV7_BRAFL	C3Z5S9_BRAFL	C3YYV7	C3Z5S9	Glyco_transf_20 domain-containing protein.	Aamy domain-containing protein.	0.832
C3YYV7_BRAFL	C3ZKB8_BRAFL	C3YYV7	C3ZKB8	Glyco_transf_20 domain-containing protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.720
C3Z103_BRAFL	C3Y4B2_BRAFL	C3Z103	C3Y4B2	Inositol-1-monophosphatase.	Inos-1-P_synth domain-containing protein.	0.958