(43 nodes) Ciliary transition zone network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y9H3_BRAFL	Uncharacterized protein. (205 aa)
	C3ZKQ7_BRAFL	TPR_REGION domain-containing protein. (506 aa)
	C3XPF9_BRAFL	Uncharacterized protein. (1346 aa)
	C3XQJ3_BRAFL	Uncharacterized protein. (506 aa)
	C3XS23_BRAFL	Uncharacterized protein. (788 aa)
	C3ZKZ2_BRAFL	Uncharacterized protein. (388 aa)
	C3XTU3_BRAFL	C2 domain-containing protein. (1222 aa)
	C3XW37_BRAFL	Uncharacterized protein. (172 aa)
	C3XW73_BRAFL	Uncharacterized protein. (454 aa)
	C3XWD2_BRAFL	PCM1_C domain-containing protein. (1969 aa)
	C3XZK6_BRAFL	Uncharacterized protein. (567 aa)
	C3Y0F6_BRAFL	Uncharacterized protein. (2807 aa)
	C3Y0F7_BRAFL	Uncharacterized protein. (2571 aa)
	C3Y182_BRAFL	Uncharacterized protein. (1620 aa)
	C3Y1J1_BRAFL	WD_REPEATS_REGION domain-containing protein. (491 aa)
	C3Y292_BRAFL	Uncharacterized protein. (440 aa)
	C3Y7Y3_BRAFL	Uncharacterized protein. (260 aa)
	C3Y8L1_BRAFL	Uncharacterized protein. (321 aa)
	C3Y9G8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1402 aa)
	C3YCS9_BRAFL	Uncharacterized protein. (202 aa)
	C3YD63_BRAFL	Uncharacterized protein. (544 aa)
	C3YE92_BRAFL	Uncharacterized protein. (702 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YKI3_BRAFL	Uncharacterized protein. (167 aa)
	C3YM09_BRAFL	RING-type domain-containing protein. (262 aa)
	C3YRB4_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	C3YRJ1_BRAFL	Uncharacterized protein. (118 aa)
	C3YX78_BRAFL	Lebercilin domain-containing protein. (220 aa)
	C3YX83_BRAFL	Lebercilin domain-containing protein. (220 aa)
	C3Z0T8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1351 aa)
	C3Z3W6_BRAFL	Uncharacterized protein. (376 aa)
	C3ZB27_BRAFL	Uncharacterized protein. (282 aa)
	C3ZC11_BRAFL	Uncharacterized protein. (937 aa)
	C3ZQC0_BRAFL	C-CAP/cofactor C-like domain-containing protein. (680 aa)
	C3ZR08_BRAFL	Uncharacterized protein. (175 aa)
	C3ZRQ9_BRAFL	Uncharacterized protein. (856 aa)
	C3ZRR0_BRAFL	Uncharacterized protein. (218 aa)
	C3ZV71_BRAFL	Uncharacterized protein. (590 aa)
	C3ZWT6_BRAFL	PDZ domain-containing protein. (90 aa)
	C3ZWT7_BRAFL	Uncharacterized protein. (92 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)
	C3ZYI6_BRAFL	Uncharacterized protein. (369 aa)
	C3ZLU3_BRAFL	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (381 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPF9_BRAFL	C3XTU3_BRAFL	C3XPF9	C3XTU3	Uncharacterized protein.	C2 domain-containing protein.	0.963
C3XPF9_BRAFL	C3XW73_BRAFL	C3XPF9	C3XW73	Uncharacterized protein.	Uncharacterized protein.	0.594
C3XPF9_BRAFL	C3Y182_BRAFL	C3XPF9	C3Y182	Uncharacterized protein.	Uncharacterized protein.	0.587
C3XPF9_BRAFL	C3Y1J1_BRAFL	C3XPF9	C3Y1J1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.530
C3XPF9_BRAFL	C3Y8L1_BRAFL	C3XPF9	C3Y8L1	Uncharacterized protein.	Uncharacterized protein.	0.688
C3XPF9_BRAFL	C3Y9G8_BRAFL	C3XPF9	C3Y9G8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.542
C3XPF9_BRAFL	C3Y9H3_BRAFL	C3XPF9	C3Y9H3	Uncharacterized protein.	Uncharacterized protein.	0.594
C3XPF9_BRAFL	C3YCS9_BRAFL	C3XPF9	C3YCS9	Uncharacterized protein.	Uncharacterized protein.	0.538
C3XPF9_BRAFL	C3YD63_BRAFL	C3XPF9	C3YD63	Uncharacterized protein.	Uncharacterized protein.	0.623
C3XPF9_BRAFL	C3YRB4_BRAFL	C3XPF9	C3YRB4	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.474
C3XPF9_BRAFL	C3YRJ1_BRAFL	C3XPF9	C3YRJ1	Uncharacterized protein.	Uncharacterized protein.	0.449
C3XPF9_BRAFL	C3ZC11_BRAFL	C3XPF9	C3ZC11	Uncharacterized protein.	Uncharacterized protein.	0.722
C3XPF9_BRAFL	C3ZKZ2_BRAFL	C3XPF9	C3ZKZ2	Uncharacterized protein.	Uncharacterized protein.	0.707
C3XPF9_BRAFL	C3ZR08_BRAFL	C3XPF9	C3ZR08	Uncharacterized protein.	Uncharacterized protein.	0.636
C3XPF9_BRAFL	C3ZV71_BRAFL	C3XPF9	C3ZV71	Uncharacterized protein.	Uncharacterized protein.	0.581
C3XQJ3_BRAFL	C3Y292_BRAFL	C3XQJ3	C3Y292	Uncharacterized protein.	Uncharacterized protein.	0.983
C3XQJ3_BRAFL	C3Y9G8_BRAFL	C3XQJ3	C3Y9G8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.890
C3XQJ3_BRAFL	C3Z0T8_BRAFL	C3XQJ3	C3Z0T8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.901
C3XQJ3_BRAFL	C3Z3W6_BRAFL	C3XQJ3	C3Z3W6	Uncharacterized protein.	Uncharacterized protein.	0.811
C3XQJ3_BRAFL	C3ZLU3_BRAFL	C3XQJ3	C3ZLU3	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.408