(4 nodes) Aggrephagy network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3Z4R9_BRAFL	Uncharacterized protein. (124 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZQX4_BRAFL	Uncharacterized protein. (1993 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XXF8_BRAFL	C3Z4R9_BRAFL	C3XXF8	C3Z4R9	Uncharacterized protein.	Uncharacterized protein.	0.770
C3XXF8_BRAFL	C3ZNT2_BRAFL	C3XXF8	C3ZNT2	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.896
C3Z4R9_BRAFL	C3XXF8_BRAFL	C3Z4R9	C3XXF8	Uncharacterized protein.	Uncharacterized protein.	0.770
C3Z4R9_BRAFL	C3ZNT2_BRAFL	C3Z4R9	C3ZNT2	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.740
C3Z4R9_BRAFL	C3ZQX4_BRAFL	C3Z4R9	C3ZQX4	Uncharacterized protein.	Uncharacterized protein.	0.402
C3ZNT2_BRAFL	C3XXF8_BRAFL	C3ZNT2	C3XXF8	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.896
C3ZNT2_BRAFL	C3Z4R9_BRAFL	C3ZNT2	C3Z4R9	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.740
C3ZQX4_BRAFL	C3Z4R9_BRAFL	C3ZQX4	C3Z4R9	Uncharacterized protein.	Uncharacterized protein.	0.402