(29 nodes) B cell activation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XTE5_BRAFL	Uncharacterized protein. (492 aa)
	C3XTK2_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	C3XU65_BRAFL	BZIP domain-containing protein. (375 aa)
	C3XZP7_BRAFL	Nk homeobox 4. (285 aa)
	C3Y1N7_BRAFL	Myb-like domain-containing protein. (2035 aa)
	C3Y3U5_BRAFL	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (303 aa)
	C3Y458_BRAFL	DNA_mis_repair domain-containing protein. (717 aa)
	C3Y6A3_BRAFL	Uncharacterized protein. (426 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3Y9A3_BRAFL	ATPase_AAA_core domain-containing protein. (2025 aa)
	C3YEQ0_BRAFL	DUF3342 domain-containing protein. (546 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YKE9_BRAFL	MARVEL domain-containing protein. (268 aa)
	C3YKZ1_BRAFL	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (264 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YMN6_BRAFL	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1278 aa)
	C3YPF6_BRAFL	LisH domain-containing protein. (1288 aa)
	C3YZ01_BRAFL	DNA ligase. (793 aa)
	C3Z1H5_BRAFL	SEFIR domain-containing protein. (163 aa)
	C3Z1H6_BRAFL	SEFIR domain-containing protein. (238 aa)
	C3Z2Q0_BRAFL	J domain-containing protein. (104 aa)
	C3Z4R4_BRAFL	TPR_REGION domain-containing protein. (698 aa)
	C3Z5X5_BRAFL	UDENN FNIP1/2-type domain-containing protein. (1126 aa)
	C3Z629_BRAFL	Prohibitin. (276 aa)
	C3Z734_BRAFL	Uncharacterized protein. (275 aa)
	C3Z8U0_BRAFL	Uncharacterized protein. (572 aa)
	C3ZET3_BRAFL	RING-type domain-containing protein. (121 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTK2_BRAFL	C3Y458_BRAFL	C3XTK2	C3Y458	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA_mis_repair domain-containing protein.	0.997
C3XTK2_BRAFL	C3Y937_BRAFL	C3XTK2	C3Y937	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.917
C3XTK2_BRAFL	C3YH71_BRAFL	C3XTK2	C3YH71	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.576
C3XTK2_BRAFL	C3YH73_BRAFL	C3XTK2	C3YH73	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	FAT domain-containing protein.	0.576
C3XTK2_BRAFL	C3YMN6_BRAFL	C3XTK2	C3YMN6	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.999
C3XTK2_BRAFL	C3YZ01_BRAFL	C3XTK2	C3YZ01	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA ligase.	0.791
C3XTK2_BRAFL	C3Z4R4_BRAFL	C3XTK2	C3Z4R4	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	TPR_REGION domain-containing protein.	0.961
C3XTK2_BRAFL	C3Z734_BRAFL	C3XTK2	C3Z734	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.961
C3Y3U5_BRAFL	C3YKZ1_BRAFL	C3Y3U5	C3YKZ1	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.905
C3Y3U5_BRAFL	C3YMN6_BRAFL	C3Y3U5	C3YMN6	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.498
C3Y3U5_BRAFL	C3YPF6_BRAFL	C3Y3U5	C3YPF6	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	LisH domain-containing protein.	0.872
C3Y458_BRAFL	C3XTK2_BRAFL	C3Y458	C3XTK2	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.997
C3Y458_BRAFL	C3Y937_BRAFL	C3Y458	C3Y937	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.828
C3Y458_BRAFL	C3YH71_BRAFL	C3Y458	C3YH71	DNA_mis_repair domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.681
C3Y458_BRAFL	C3YH73_BRAFL	C3Y458	C3YH73	DNA_mis_repair domain-containing protein.	FAT domain-containing protein.	0.681
C3Y458_BRAFL	C3YMN6_BRAFL	C3Y458	C3YMN6	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.996
C3Y458_BRAFL	C3YZ01_BRAFL	C3Y458	C3YZ01	DNA_mis_repair domain-containing protein.	DNA ligase.	0.771
C3Y458_BRAFL	C3Z4R4_BRAFL	C3Y458	C3Z4R4	DNA_mis_repair domain-containing protein.	TPR_REGION domain-containing protein.	0.962
C3Y458_BRAFL	C3Z734_BRAFL	C3Y458	C3Z734	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.962
C3Y6A3_BRAFL	C3YZ01_BRAFL	C3Y6A3	C3YZ01	Uncharacterized protein.	DNA ligase.	0.667