(48 nodes) Retrograde transport, endosome to Golgi network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YJ65_BRAFL	Dynactin domain-containing protein. (1139 aa)
	C3XT97_BRAFL	WASH_WAHD domain-containing protein. (297 aa)
	C3XUQ0_BRAFL	PX domain-containing protein. (164 aa)
	C3XVI7_BRAFL	PH domain-containing protein. (134 aa)
	C3XVQ2_BRAFL	Metallophos_2 domain-containing protein. (157 aa)
	C3XXW5_BRAFL	PH domain-containing protein. (152 aa)
	C3XZE1_BRAFL	Rab-GAP TBC domain-containing protein. (596 aa)
	C3XZI6_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	C3Y069_BRAFL	Uncharacterized protein. (1975 aa)
	C3Y074_BRAFL	Sorting nexin; Involved in several stages of intracellular trafficking. (415 aa)
	C3Y0K3_BRAFL	Vps53_N domain-containing protein. (824 aa)
	C3Y1F8_BRAFL	Uncharacterized protein. (201 aa)
	C3Y2M7_BRAFL	Uncharacterized protein. (1332 aa)
	C3Y4K0_BRAFL	Uncharacterized protein. (727 aa)
	C3Y8K9_BRAFL	Uncharacterized protein. (157 aa)
	C3YBQ6_BRAFL	PX domain-containing protein. (450 aa)
	C3YCP3_BRAFL	Rab-GAP TBC domain-containing protein. (766 aa)
	C3YGH7_BRAFL	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (779 aa)
	C3YH01_BRAFL	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (331 aa)
	C3YJ61_BRAFL	Uncharacterized protein. (537 aa)
	C3YJ63_BRAFL	Uncharacterized protein. (261 aa)
	C3YJ64_BRAFL	CAP-Gly domain-containing protein. (113 aa)
	C3YMC2_BRAFL	RIC1 domain-containing protein. (1459 aa)
	C3YPL0_BRAFL	Uncharacterized protein. (519 aa)
	C3YPR1_BRAFL	PX domain-containing protein. (497 aa)
	C3YRV4_BRAFL	Uncharacterized protein. (198 aa)
	C3YS62_BRAFL	Uncharacterized protein. (309 aa)
	C3YVK2_BRAFL	Uncharacterized protein. (168 aa)
	C3YW66_BRAFL	Ras-related protein rab-9a. (180 aa)
	C3YX42_BRAFL	Uncharacterized protein. (1116 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3Z1V5_BRAFL	Uncharacterized protein. (117 aa)
	C3Z2B3_BRAFL	Uncharacterized protein. (1417 aa)
	C3Z2I4_BRAFL	Uncharacterized protein. (403 aa)
	C3Z5P8_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (196 aa)
	C3Z641_BRAFL	Uncharacterized protein. (66 aa)
	C3Z642_BRAFL	Sec7_N domain-containing protein. (553 aa)
	C3Z6Y3_BRAFL	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1160 aa)
	C3Z7S3_BRAFL	EH domain-containing protein. (452 aa)
	C3Z9A8_BRAFL	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1533 aa)
	C3ZAU4_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (318 aa)
	C3ZEE0_BRAFL	Uncharacterized protein. (196 aa)
	C3ZG74_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (232 aa)
	C3ZGY1_BRAFL	Rab-GAP TBC domain-containing protein. (1458 aa)
	C3ZKM2_BRAFL	Uncharacterized protein. (440 aa)
	C3ZQC9_BRAFL	Uncharacterized protein. (215 aa)
	C3ZQD2_BRAFL	Uncharacterized protein. (3096 aa)
	C3ZSI1_BRAFL	Uncharacterized protein. (317 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XT97_BRAFL	C3YGH7_BRAFL	C3XT97	C3YGH7	WASH_WAHD domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.504
C3XT97_BRAFL	C3Z2B3_BRAFL	C3XT97	C3Z2B3	WASH_WAHD domain-containing protein.	Uncharacterized protein.	0.970
C3XUQ0_BRAFL	C3XVQ2_BRAFL	C3XUQ0	C3XVQ2	PX domain-containing protein.	Metallophos_2 domain-containing protein.	0.962
C3XUQ0_BRAFL	C3XZE1_BRAFL	C3XUQ0	C3XZE1	PX domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.440
C3XUQ0_BRAFL	C3Y074_BRAFL	C3XUQ0	C3Y074	PX domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.717
C3XUQ0_BRAFL	C3Y2M7_BRAFL	C3XUQ0	C3Y2M7	PX domain-containing protein.	Uncharacterized protein.	0.437
C3XUQ0_BRAFL	C3YBQ6_BRAFL	C3XUQ0	C3YBQ6	PX domain-containing protein.	PX domain-containing protein.	0.815
C3XUQ0_BRAFL	C3YGH7_BRAFL	C3XUQ0	C3YGH7	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.995
C3XUQ0_BRAFL	C3Z2B3_BRAFL	C3XUQ0	C3Z2B3	PX domain-containing protein.	Uncharacterized protein.	0.446
C3XUQ0_BRAFL	C3Z7S3_BRAFL	C3XUQ0	C3Z7S3	PX domain-containing protein.	EH domain-containing protein.	0.437
C3XUQ0_BRAFL	C3ZGY1_BRAFL	C3XUQ0	C3ZGY1	PX domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.518
C3XUQ0_BRAFL	C3ZSI1_BRAFL	C3XUQ0	C3ZSI1	PX domain-containing protein.	Uncharacterized protein.	0.994
C3XVQ2_BRAFL	C3XUQ0_BRAFL	C3XVQ2	C3XUQ0	Metallophos_2 domain-containing protein.	PX domain-containing protein.	0.962
C3XVQ2_BRAFL	C3Y074_BRAFL	C3XVQ2	C3Y074	Metallophos_2 domain-containing protein.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.736
C3XVQ2_BRAFL	C3Y0K3_BRAFL	C3XVQ2	C3Y0K3	Metallophos_2 domain-containing protein.	Vps53_N domain-containing protein.	0.519
C3XVQ2_BRAFL	C3Y2M7_BRAFL	C3XVQ2	C3Y2M7	Metallophos_2 domain-containing protein.	Uncharacterized protein.	0.578
C3XVQ2_BRAFL	C3YBQ6_BRAFL	C3XVQ2	C3YBQ6	Metallophos_2 domain-containing protein.	PX domain-containing protein.	0.990
C3XVQ2_BRAFL	C3YGH7_BRAFL	C3XVQ2	C3YGH7	Metallophos_2 domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
C3XVQ2_BRAFL	C3YH01_BRAFL	C3XVQ2	C3YH01	Metallophos_2 domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.584
C3XVQ2_BRAFL	C3YPR1_BRAFL	C3XVQ2	C3YPR1	Metallophos_2 domain-containing protein.	PX domain-containing protein.	0.536