(28 nodes) Cellular response to glucose starvation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YBW1_BRAFL	Uncharacterized protein. (304 aa)
	C3YIZ8_BRAFL	Protein kinase domain-containing protein. (1015 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YPM3_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (270 aa)
	C3YZC3_BRAFL	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (307 aa)
	C3Z2L1_BRAFL	Uncharacterized protein. (452 aa)
	C3Z6D7_BRAFL	Uncharacterized protein. (1235 aa)
	C3ZPW5_BRAFL	Uncharacterized protein. (201 aa)
	C3ZPW6_BRAFL	Uncharacterized protein. (619 aa)
	C3ZPW7_BRAFL	Uncharacterized protein. (3219 aa)
	C3ZSP0_BRAFL	BZIP domain-containing protein. (404 aa)
	C3ZTF9_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)
	C3XRU9_BRAFL	Protein kinase domain-containing protein. (575 aa)
	C3XTE9_BRAFL	Uncharacterized protein. (482 aa)
	C3XUC8_BRAFL	RWD domain-containing protein. (270 aa)
	C3XVA7_BRAFL	WD_REPEATS_REGION domain-containing protein. (434 aa)
	C3XVR6_BRAFL	BZIP domain-containing protein. (242 aa)
	Thop1.1	BZIP domain-containing protein. (336 aa)
	C3XY35_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (442 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3Y0C3_BRAFL	Uncharacterized protein. (516 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3Y319_BRAFL	Uncharacterized protein. (450 aa)
	C3Y5M5_BRAFL	Protein kinase domain-containing protein. (595 aa)
	C3Y6A3_BRAFL	Uncharacterized protein. (426 aa)
	C3Y975_BRAFL	Uncharacterized protein. (395 aa)
	C3YCL4_BRAFL	Non-specific serine/threonine protein kinase. (492 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTE9_BRAFL	C3Y319_BRAFL	C3XTE9	C3Y319	Uncharacterized protein.	Uncharacterized protein.	0.579
C3XTE9_BRAFL	C3Y6A3_BRAFL	C3XTE9	C3Y6A3	Uncharacterized protein.	Uncharacterized protein.	0.605
C3XTE9_BRAFL	C3YBW1_BRAFL	C3XTE9	C3YBW1	Uncharacterized protein.	Uncharacterized protein.	0.697
C3XTE9_BRAFL	C3YCL4_BRAFL	C3XTE9	C3YCL4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.714
C3XTE9_BRAFL	C3Z2L1_BRAFL	C3XTE9	C3Z2L1	Uncharacterized protein.	Uncharacterized protein.	0.634
C3XTE9_BRAFL	C3ZPW5_BRAFL	C3XTE9	C3ZPW5	Uncharacterized protein.	Uncharacterized protein.	0.447
C3XTE9_BRAFL	C3ZPW6_BRAFL	C3XTE9	C3ZPW6	Uncharacterized protein.	Uncharacterized protein.	0.447
C3XTE9_BRAFL	C3ZPW7_BRAFL	C3XTE9	C3ZPW7	Uncharacterized protein.	Uncharacterized protein.	0.447
C3XVR6_BRAFL	C3ZTF9_BRAFL	C3XVR6	C3ZTF9	BZIP domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.462
C3XY35_BRAFL	C3YBW1_BRAFL	C3XY35	C3YBW1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.664
C3XY35_BRAFL	C3YPM3_BRAFL	C3XY35	C3YPM3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.403
C3XYM7_BRAFL	C3Y0C3_BRAFL	C3XYM7	C3Y0C3	Uncharacterized protein.	Uncharacterized protein.	0.986
C3XYM7_BRAFL	C3Y1V6_BRAFL	C3XYM7	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.987
C3XYM7_BRAFL	C3YBW1_BRAFL	C3XYM7	C3YBW1	Uncharacterized protein.	Uncharacterized protein.	0.650
C3XYM7_BRAFL	C3YCL4_BRAFL	C3XYM7	C3YCL4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.609
C3XYM7_BRAFL	C3ZYW7_BRAFL	C3XYM7	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.543
C3Y0C3_BRAFL	C3XYM7_BRAFL	C3Y0C3	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.986
C3Y0C3_BRAFL	C3Y1V6_BRAFL	C3Y0C3	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.997
C3Y0C3_BRAFL	C3YCL4_BRAFL	C3Y0C3	C3YCL4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.664
C3Y0C3_BRAFL	C3ZYW7_BRAFL	C3Y0C3	C3ZYW7	Uncharacterized protein.	Uncharacterized protein.	0.986