(19 nodes) Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway network (Branchiostoma floridae)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YYU3_BRAFL	Uncharacterized protein. (173 aa)
	C3XTH3_BRAFL	Uncharacterized protein. (217 aa)
	C3XVP4_BRAFL	VPS37 C-terminal domain-containing protein. (169 aa)
	C3XW59_BRAFL	VPS37 C-terminal domain-containing protein. (287 aa)
	C3Y2Y1_BRAFL	Uncharacterized protein. (483 aa)
	C3Y3K6_BRAFL	GLUE N-terminal domain-containing protein. (392 aa)
	C3Y9Y1_BRAFL	Uncharacterized protein. (798 aa)
	C3YEH0_BRAFL	Uncharacterized protein; Belongs to the AAA ATPase family. (440 aa)
	C3YG01_BRAFL	Uncharacterized protein. (371 aa)
	C3YIV6_BRAFL	Uncharacterized protein. (222 aa)
	C3YQ01_BRAFL	RING-type domain-containing protein. (267 aa)
	C3Z6I7_BRAFL	UEV domain-containing protein. (115 aa)
	C3Z6I8_BRAFL	UEV domain-containing protein. (112 aa)
	C3ZD31_BRAFL	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (218 aa)
	C3ZGP6_BRAFL	Uncharacterized protein. (521 aa)
	C3ZHM1_BRAFL	Uncharacterized protein. (225 aa)
	C3ZT96_BRAFL	Uncharacterized protein. (1672 aa)
	C3ZUX5_BRAFL	UEV domain-containing protein. (143 aa)
	C3ZYE4_BRAFL	MIT domain-containing protein. (115 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTH3_BRAFL	C3XVP4_BRAFL	C3XTH3	C3XVP4	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.890
C3XTH3_BRAFL	C3XW59_BRAFL	C3XTH3	C3XW59	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.818
C3XTH3_BRAFL	C3Y2Y1_BRAFL	C3XTH3	C3Y2Y1	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3Y3K6_BRAFL	C3XTH3	C3Y3K6	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.901
C3XTH3_BRAFL	C3YEH0_BRAFL	C3XTH3	C3YEH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.766
C3XTH3_BRAFL	C3YG01_BRAFL	C3XTH3	C3YG01	Uncharacterized protein.	Uncharacterized protein.	0.746
C3XTH3_BRAFL	C3YIV6_BRAFL	C3XTH3	C3YIV6	Uncharacterized protein.	Uncharacterized protein.	0.904
C3XTH3_BRAFL	C3YYU3_BRAFL	C3XTH3	C3YYU3	Uncharacterized protein.	Uncharacterized protein.	0.901
C3XTH3_BRAFL	C3Z6I7_BRAFL	C3XTH3	C3Z6I7	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3Z6I8_BRAFL	C3XTH3	C3Z6I8	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3ZD31_BRAFL	C3XTH3	C3ZD31	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.909
C3XTH3_BRAFL	C3ZGP6_BRAFL	C3XTH3	C3ZGP6	Uncharacterized protein.	Uncharacterized protein.	0.640
C3XTH3_BRAFL	C3ZHM1_BRAFL	C3XTH3	C3ZHM1	Uncharacterized protein.	Uncharacterized protein.	0.908
C3XTH3_BRAFL	C3ZUX5_BRAFL	C3XTH3	C3ZUX5	Uncharacterized protein.	UEV domain-containing protein.	0.746
C3XTH3_BRAFL	C3ZYE4_BRAFL	C3XTH3	C3ZYE4	Uncharacterized protein.	MIT domain-containing protein.	0.766
C3XVP4_BRAFL	C3XTH3_BRAFL	C3XVP4	C3XTH3	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.890
C3XVP4_BRAFL	C3XW59_BRAFL	C3XVP4	C3XW59	VPS37 C-terminal domain-containing protein.	VPS37 C-terminal domain-containing protein.	0.972
C3XVP4_BRAFL	C3Y2Y1_BRAFL	C3XVP4	C3Y2Y1	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.924
C3XVP4_BRAFL	C3Y3K6_BRAFL	C3XVP4	C3Y3K6	VPS37 C-terminal domain-containing protein.	GLUE N-terminal domain-containing protein.	0.930
C3XVP4_BRAFL	C3YG01_BRAFL	C3XVP4	C3YG01	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.924