(16 nodes) Proteasome assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQT4_BRAFL	RPN13_C domain-containing protein. (285 aa)
	Hsd11b1F	PDZ domain-containing protein. (199 aa)
	C3ZAU9_BRAFL	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family. (270 aa)
	C3YZA5_BRAFL	Uncharacterized protein. (121 aa)
	C3YX64_BRAFL	Uncharacterized protein. (278 aa)
	C3YX31_BRAFL	WD_REPEATS_REGION domain-containing protein. (389 aa)
	C3YSC0_BRAFL	Uncharacterized protein. (114 aa)
	C3YPP3_BRAFL	ANK_REP_REGION domain-containing protein. (89 aa)
	C3YPP0_BRAFL	ANK_REP_REGION domain-containing protein. (118 aa)
	C3Y9V8_BRAFL	Uncharacterized protein. (658 aa)
	C3YEG2_BRAFL	ANK_REP_REGION domain-containing protein. (93 aa)
	C3YLX3_BRAFL	ANK_REP_REGION domain-containing protein. (198 aa)
	C3ZS90_BRAFL	ANK_REP_REGION domain-containing protein. (145 aa)
	C3ZPM6_BRAFL	PCI domain-containing protein. (427 aa)
	C3Y322_BRAFL	Uncharacterized protein. (503 aa)
	C3Y9V6_BRAFL	Uncharacterized protein. (1047 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y322_BRAFL	C3YEG2_BRAFL	C3Y322	C3YEG2	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.494
C3Y322_BRAFL	C3ZPM6_BRAFL	C3Y322	C3ZPM6	Uncharacterized protein.	PCI domain-containing protein.	0.959
C3Y322_BRAFL	C3ZQT4_BRAFL	C3Y322	C3ZQT4	Uncharacterized protein.	RPN13_C domain-containing protein.	0.985
C3Y322_BRAFL	C3ZS90_BRAFL	C3Y322	C3ZS90	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.494
C3Y322_BRAFL	Hsd11b1F	C3Y322	C3ZJL4	Uncharacterized protein.	PDZ domain-containing protein.	0.783
C3Y9V6_BRAFL	C3Y9V8_BRAFL	C3Y9V6	C3Y9V8	Uncharacterized protein.	Uncharacterized protein.	0.950
C3Y9V6_BRAFL	C3YSC0_BRAFL	C3Y9V6	C3YSC0	Uncharacterized protein.	Uncharacterized protein.	0.429
C3Y9V6_BRAFL	C3ZPM6_BRAFL	C3Y9V6	C3ZPM6	Uncharacterized protein.	PCI domain-containing protein.	0.848
C3Y9V6_BRAFL	C3ZQT4_BRAFL	C3Y9V6	C3ZQT4	Uncharacterized protein.	RPN13_C domain-containing protein.	0.624
C3Y9V8_BRAFL	C3Y9V6_BRAFL	C3Y9V8	C3Y9V6	Uncharacterized protein.	Uncharacterized protein.	0.950
C3Y9V8_BRAFL	C3YSC0_BRAFL	C3Y9V8	C3YSC0	Uncharacterized protein.	Uncharacterized protein.	0.429
C3Y9V8_BRAFL	C3ZPM6_BRAFL	C3Y9V8	C3ZPM6	Uncharacterized protein.	PCI domain-containing protein.	0.848
C3Y9V8_BRAFL	C3ZQT4_BRAFL	C3Y9V8	C3ZQT4	Uncharacterized protein.	RPN13_C domain-containing protein.	0.624
C3YEG2_BRAFL	C3Y322_BRAFL	C3YEG2	C3Y322	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.494
C3YEG2_BRAFL	C3YLX3_BRAFL	C3YEG2	C3YLX3	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.455
C3YEG2_BRAFL	C3YX31_BRAFL	C3YEG2	C3YX31	ANK_REP_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.926
C3YEG2_BRAFL	C3ZPM6_BRAFL	C3YEG2	C3ZPM6	ANK_REP_REGION domain-containing protein.	PCI domain-containing protein.	0.923
C3YEG2_BRAFL	C3ZQT4_BRAFL	C3YEG2	C3ZQT4	ANK_REP_REGION domain-containing protein.	RPN13_C domain-containing protein.	0.717
C3YEG2_BRAFL	Hsd11b1F	C3YEG2	C3ZJL4	ANK_REP_REGION domain-containing protein.	PDZ domain-containing protein.	0.725
C3YLX3_BRAFL	C3YEG2_BRAFL	C3YLX3	C3YEG2	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.455