(29 nodes) Apoptotic cell clearance network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XW00_BRAFL	Uncharacterized protein. (122 aa)
	C3XPQ3_BRAFL	Uncharacterized protein. (197 aa)
	C3XRW5_BRAFL	Protein kinase domain-containing protein. (119 aa)
	C3XRW6_BRAFL	Receptor protein-tyrosine kinase. (609 aa)
	C3XUK9_BRAFL	XK-related protein. (364 aa)
	C3XV74_BRAFL	XK-related protein. (943 aa)
	C3XXH6_BRAFL	XK-related protein. (272 aa)
	C3Y1R0_BRAFL	Spatacsin_C domain-containing protein. (1876 aa)
	C3YB08_BRAFL	XK-related protein. (294 aa)
	C3YDB1_BRAFL	XK-related protein. (385 aa)
	C3YEW7_BRAFL	Uncharacterized protein. (460 aa)
	C3YI74_BRAFL	Uncharacterized protein. (1255 aa)
	C3YJ47_BRAFL	Uncharacterized protein. (671 aa)
	C3YK66_BRAFL	Uncharacterized protein. (126 aa)
	C3YKX9_BRAFL	Uncharacterized protein. (564 aa)
	C3YRZ0_BRAFL	Uncharacterized protein. (142 aa)
	C3YT62_BRAFL	EGF-like domain-containing protein. (126 aa)
	C3YT64_BRAFL	Protein kinase domain-containing protein. (149 aa)
	C3YVY3_BRAFL	XK-related protein. (445 aa)
	C3Z9D1_BRAFL	Uncharacterized protein. (682 aa)
	C3ZD61_BRAFL	XK-related protein. (308 aa)
	C3ZEZ9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (291 aa)
	C3ZLT5_BRAFL	Uncharacterized protein. (182 aa)
	C3ZLT6_BRAFL	BTB domain-containing protein. (474 aa)
	C3ZRW5_BRAFL	XK-related protein. (363 aa)
	C3ZZD5_BRAFL	XK-related protein. (470 aa)
	C3ZZD7_BRAFL	XK-related protein. (336 aa)
	C4A013_BRAFL	XK-related protein. (336 aa)
	C4A015_BRAFL	XK-related protein. (232 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRW5_BRAFL	C3XRW6_BRAFL	C3XRW5	C3XRW6	Protein kinase domain-containing protein.	Receptor protein-tyrosine kinase.	0.870
C3XRW5_BRAFL	C3YEW7_BRAFL	C3XRW5	C3YEW7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.951
C3XRW5_BRAFL	C3YKX9_BRAFL	C3XRW5	C3YKX9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.746
C3XRW6_BRAFL	C3XRW5_BRAFL	C3XRW6	C3XRW5	Receptor protein-tyrosine kinase.	Protein kinase domain-containing protein.	0.870
C3XRW6_BRAFL	C3YEW7_BRAFL	C3XRW6	C3YEW7	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.951
C3XRW6_BRAFL	C3YKX9_BRAFL	C3XRW6	C3YKX9	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.746
C3YEW7_BRAFL	C3XRW5_BRAFL	C3YEW7	C3XRW5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.951
C3YEW7_BRAFL	C3XRW6_BRAFL	C3YEW7	C3XRW6	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.951
C3YEW7_BRAFL	C3YT64_BRAFL	C3YEW7	C3YT64	Uncharacterized protein.	Protein kinase domain-containing protein.	0.689
C3YJ47_BRAFL	C3YT64_BRAFL	C3YJ47	C3YT64	Uncharacterized protein.	Protein kinase domain-containing protein.	0.460
C3YKX9_BRAFL	C3XRW5_BRAFL	C3YKX9	C3XRW5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.746
C3YKX9_BRAFL	C3XRW6_BRAFL	C3YKX9	C3XRW6	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.746
C3YKX9_BRAFL	C3YT64_BRAFL	C3YKX9	C3YT64	Uncharacterized protein.	Protein kinase domain-containing protein.	0.689
C3YT64_BRAFL	C3YEW7_BRAFL	C3YT64	C3YEW7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.689
C3YT64_BRAFL	C3YJ47_BRAFL	C3YT64	C3YJ47	Protein kinase domain-containing protein.	Uncharacterized protein.	0.460
C3YT64_BRAFL	C3YKX9_BRAFL	C3YT64	C3YKX9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.689
C3YT64_BRAFL	C3ZEZ9_BRAFL	C3YT64	C3ZEZ9	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.465
C3YT64_BRAFL	C3ZLT5_BRAFL	C3YT64	C3ZLT5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.460
C3YT64_BRAFL	C3ZLT6_BRAFL	C3YT64	C3ZLT6	Protein kinase domain-containing protein.	BTB domain-containing protein.	0.460
C3ZEZ9_BRAFL	C3YT64_BRAFL	C3ZEZ9	C3YT64	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Protein kinase domain-containing protein.	0.465