(40 nodes) Response to alkaloid network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZXH8_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (730 aa)
	C3Z2B1_BRAFL	Uncharacterized protein. (2638 aa)
	C3Z2B2_BRAFL	Uncharacterized protein. (168 aa)
	C3Z6I4_BRAFL	Uncharacterized protein. (107 aa)
	C3Z6L3_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (283 aa)
	C3Z6L4_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (104 aa)
	C3Z7V3_BRAFL	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (344 aa)
	C3ZBQ9_BRAFL	Helicase ATP-binding domain-containing protein. (270 aa)
	C3ZEW4_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (385 aa)
	C3ZHI0_BRAFL	Helicase ATP-binding domain-containing protein. (504 aa)
	C3ZKV9_BRAFL	PALP domain-containing protein. (332 aa)
	C3ZMS9_BRAFL	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (417 aa)
	C3Z2B0_BRAFL	Uncharacterized protein. (163 aa)
	C3ZR37_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	C3ZR83_BRAFL	Uncharacterized protein. (459 aa)
	C3ZW96_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (784 aa)
	C3XQ11_BRAFL	PALP domain-containing protein. (321 aa)
	C3XS09_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (427 aa)
	C3XS18_BRAFL	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (571 aa)
	C3XT78_BRAFL	Uncharacterized protein. (458 aa)
	C3XU62_BRAFL	Uncharacterized protein. (1010 aa)
	C3XUC4_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (399 aa)
	C3XUX1_BRAFL	Uncharacterized protein. (1635 aa)
	C3XXN1_BRAFL	HECT domain-containing protein. (1032 aa)
	C3Y282_BRAFL	WH1 domain-containing protein. (561 aa)
	C3XZW3_BRAFL	WD_REPEATS_REGION domain-containing protein. (1584 aa)
	C3Y2B8_BRAFL	PALP domain-containing protein. (329 aa)
	C3Y2H9_BRAFL	Amino acid transporter. (522 aa)
	C3Y771_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (388 aa)
	C3Y8N4_BRAFL	Helicase C-terminal domain-containing protein. (591 aa)
	C3Y9G9_BRAFL	Uncharacterized protein. (112 aa)
	C3Y9H0_BRAFL	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (348 aa)
	C3YDM6_BRAFL	Protein kinase domain-containing protein. (1887 aa)
	C3YKR1_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (666 aa)
	C3YMK9_BRAFL	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (1679 aa)
	C3YNJ8_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (413 aa)
	C3YZM5_BRAFL	Uncharacterized protein. (453 aa)
	C3YZS4_BRAFL	Uncharacterized protein. (122 aa)
	C3YZS6_BRAFL	Uncharacterized protein. (425 aa)
	C3Z2A8_BRAFL	Ion_trans domain-containing protein. (194 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQ11_BRAFL	C3XUX1_BRAFL	C3XQ11	C3XUX1	PALP domain-containing protein.	Uncharacterized protein.	0.900
C3XQ11_BRAFL	C3ZKV9_BRAFL	C3XQ11	C3ZKV9	PALP domain-containing protein.	PALP domain-containing protein.	0.902
C3XS09_BRAFL	C3XT78_BRAFL	C3XS09	C3XT78	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XS09_BRAFL	C3Y8N4_BRAFL	C3XS09	C3Y8N4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase C-terminal domain-containing protein.	0.554
C3XS09_BRAFL	C3YKR1_BRAFL	C3XS09	C3YKR1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.554
C3XS09_BRAFL	C3YZM5_BRAFL	C3XS09	C3YZM5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XS09_BRAFL	C3Z6I4_BRAFL	C3XS09	C3Z6I4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XS09_BRAFL	C3ZBQ9_BRAFL	C3XS09	C3ZBQ9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase ATP-binding domain-containing protein.	0.554
C3XS09_BRAFL	C3ZHI0_BRAFL	C3XS09	C3ZHI0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Helicase ATP-binding domain-containing protein.	0.554
C3XS09_BRAFL	C3ZR83_BRAFL	C3XS09	C3ZR83	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.554
C3XT78_BRAFL	C3XS09_BRAFL	C3XT78	C3XS09	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.554
C3XUX1_BRAFL	C3XQ11_BRAFL	C3XUX1	C3XQ11	Uncharacterized protein.	PALP domain-containing protein.	0.900
C3XUX1_BRAFL	C3ZKV9_BRAFL	C3XUX1	C3ZKV9	Uncharacterized protein.	PALP domain-containing protein.	0.900
C3Y8N4_BRAFL	C3XS09_BRAFL	C3Y8N4	C3XS09	Helicase C-terminal domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.554
C3Y8N4_BRAFL	C3YZM5_BRAFL	C3Y8N4	C3YZM5	Helicase C-terminal domain-containing protein.	Uncharacterized protein.	0.536
C3Y8N4_BRAFL	C3ZBQ9_BRAFL	C3Y8N4	C3ZBQ9	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.537
C3Y8N4_BRAFL	C3ZHI0_BRAFL	C3Y8N4	C3ZHI0	Helicase C-terminal domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.536
C3Y9G9_BRAFL	C3Y9H0_BRAFL	C3Y9G9	C3Y9H0	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.508
C3Y9G9_BRAFL	C3Z7V3_BRAFL	C3Y9G9	C3Z7V3	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.491
C3Y9G9_BRAFL	C3ZMS9_BRAFL	C3Y9G9	C3ZMS9	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.513