(57 nodes) Pigmentation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YID0_BRAFL	Uncharacterized protein. (446 aa)
	C3XSA6_BRAFL	Uncharacterized protein. (161 aa)
	C3XVH7_BRAFL	VPS9 domain-containing protein. (447 aa)
	C3XVT2_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (575 aa)
	C3XX83_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (304 aa)
	C3Y3E4_BRAFL	TNFR-Cys domain-containing protein. (948 aa)
	C3Y5V4_BRAFL	Uncharacterized protein. (686 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3YA02_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (555 aa)
	C3YA03_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (548 aa)
	C3YA80_BRAFL	Uncharacterized protein. (144 aa)
	C3YDN0_BRAFL	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (125 aa)
	C3YDX8_BRAFL	Uncharacterized protein. (217 aa)
	C3YE67_BRAFL	Uncharacterized protein; Belongs to the tumor necrosis factor family. (180 aa)
	C3YEZ7_BRAFL	Tetraspanin. (303 aa)
	C3YEZ8_BRAFL	Tetraspanin. (304 aa)
	C3YFN5_BRAFL	VPS9 domain-containing protein. (529 aa)
	C3YG81_BRAFL	Tyrosinase_Cu-bd domain-containing protein. (522 aa)
	C3YH90_BRAFL	Uncharacterized protein. (308 aa)
	C3YI49_BRAFL	SAC domain-containing protein. (888 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3YJ64_BRAFL	CAP-Gly domain-containing protein. (113 aa)
	C3YJ65_BRAFL	Dynactin domain-containing protein. (1139 aa)
	C3YLR1_BRAFL	Uncharacterized protein. (188 aa)
	C3YML7_BRAFL	Uncharacterized protein. (155 aa)
	C3YPZ8_BRAFL	Uncharacterized protein. (415 aa)
	C3YXX2_BRAFL	Uncharacterized protein. (310 aa)
	C3YYJ0_BRAFL	Uncharacterized protein. (2116 aa)
	C3YYK2_BRAFL	Uncharacterized protein. (457 aa)
	C3Z220_BRAFL	Uncharacterized protein. (448 aa)
	C3Z2B8_BRAFL	Uncharacterized protein. (836 aa)
	C3Z367_BRAFL	Uncharacterized protein. (885 aa)
	C3Z3J4_BRAFL	Uncharacterized protein. (1120 aa)
	C3Z4T4_BRAFL	Uncharacterized protein. (340 aa)
	C3Z5N4_BRAFL	Uncharacterized protein. (491 aa)
	C3Z6B6_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (387 aa)
	C3Z6E4_BRAFL	Uncharacterized protein. (1203 aa)
	C3ZD27_BRAFL	Na_Ca_ex domain-containing protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (560 aa)
	C3ZDW2_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (374 aa)
	C3ZDW4_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (288 aa)
	C3ZDW5_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (412 aa)
	C3ZDW6_BRAFL	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (412 aa)
	C3ZG55_BRAFL	Uncharacterized protein. (533 aa)
	C3ZK76_BRAFL	RING-type domain-containing protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (2133 aa)
	C3ZNJ1_BRAFL	Uncharacterized protein. (444 aa)
	C3ZPB1_BRAFL	Uncharacterized protein. (466 aa)
	C3ZPW5_BRAFL	Uncharacterized protein. (201 aa)
	C3ZPW6_BRAFL	Uncharacterized protein. (619 aa)
	C3ZPW7_BRAFL	Uncharacterized protein. (3219 aa)
	C3ZRS7_BRAFL	Uncharacterized protein. (159 aa)
	C3ZT79_BRAFL	Tetraspanin. (251 aa)
	C3ZV77_BRAFL	Ras-GAP domain-containing protein. (1311 aa)
	C3ZV81_BRAFL	CRAL-TRIO domain-containing protein. (1389 aa)
	C3ZW77_BRAFL	Uncharacterized protein. (457 aa)
	C3ZXB4_BRAFL	Uncharacterized protein. (234 aa)
	C3ZXT6_BRAFL	Uncharacterized protein. (162 aa)
	C4A096_BRAFL	Uncharacterized protein. (200 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVH7_BRAFL	C3Y8H3_BRAFL	C3XVH7	C3Y8H3	VPS9 domain-containing protein.	Uncharacterized protein.	0.478
C3XVH7_BRAFL	C3YA80_BRAFL	C3XVH7	C3YA80	VPS9 domain-containing protein.	Uncharacterized protein.	0.478
C3XVT2_BRAFL	C3YI49_BRAFL	C3XVT2	C3YI49	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	SAC domain-containing protein.	0.463
C3XVT2_BRAFL	C3Z6B6_BRAFL	C3XVT2	C3Z6B6	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.765
C3Y3E4_BRAFL	C3ZDW2_BRAFL	C3Y3E4	C3ZDW2	TNFR-Cys domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.818
C3Y3E4_BRAFL	C3ZDW4_BRAFL	C3Y3E4	C3ZDW4	TNFR-Cys domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.628
C3Y3E4_BRAFL	C3ZDW5_BRAFL	C3Y3E4	C3ZDW5	TNFR-Cys domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.742
C3Y3E4_BRAFL	C3ZDW6_BRAFL	C3Y3E4	C3ZDW6	TNFR-Cys domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.818
C3Y5V4_BRAFL	C3Y8H3_BRAFL	C3Y5V4	C3Y8H3	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y5V4_BRAFL	C3YA80_BRAFL	C3Y5V4	C3YA80	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y5V4_BRAFL	C3YDN0_BRAFL	C3Y5V4	C3YDN0	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.650
C3Y5V4_BRAFL	C3YID0_BRAFL	C3Y5V4	C3YID0	Uncharacterized protein.	Uncharacterized protein.	0.451
C3Y5V4_BRAFL	C3YML7_BRAFL	C3Y5V4	C3YML7	Uncharacterized protein.	Uncharacterized protein.	0.558
C3Y5V4_BRAFL	C3Z2B8_BRAFL	C3Y5V4	C3Z2B8	Uncharacterized protein.	Uncharacterized protein.	0.762
C3Y5V4_BRAFL	C3Z3J4_BRAFL	C3Y5V4	C3Z3J4	Uncharacterized protein.	Uncharacterized protein.	0.568
C3Y5V4_BRAFL	C3Z6E4_BRAFL	C3Y5V4	C3Z6E4	Uncharacterized protein.	Uncharacterized protein.	0.969
C3Y5V4_BRAFL	C3ZRS7_BRAFL	C3Y5V4	C3ZRS7	Uncharacterized protein.	Uncharacterized protein.	0.572
C3Y5V4_BRAFL	C3ZXB4_BRAFL	C3Y5V4	C3ZXB4	Uncharacterized protein.	Uncharacterized protein.	0.576
C3Y5V4_BRAFL	C4A096_BRAFL	C3Y5V4	C4A096	Uncharacterized protein.	Uncharacterized protein.	0.576
C3Y8H3_BRAFL	C3XVH7_BRAFL	C3Y8H3	C3XVH7	Uncharacterized protein.	VPS9 domain-containing protein.	0.478