(12 nodes) Cellular pigment accumulation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3YML7_BRAFL	Uncharacterized protein. (155 aa)
	C3ZT79_BRAFL	Tetraspanin. (251 aa)
	C3ZXB4_BRAFL	Uncharacterized protein. (234 aa)
	C4A096_BRAFL	Uncharacterized protein. (200 aa)
	C3YEZ8_BRAFL	Tetraspanin. (304 aa)
	C3YFN5_BRAFL	VPS9 domain-containing protein. (529 aa)
	C3Y8H3_BRAFL	Uncharacterized protein. (180 aa)
	C3XVH7_BRAFL	VPS9 domain-containing protein. (447 aa)
	C3YIE0_BRAFL	Adaptin_N domain-containing protein. (1179 aa)
	C3YDN0_BRAFL	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (125 aa)
	C3YA80_BRAFL	Uncharacterized protein. (144 aa)
	C3YEZ7_BRAFL	Tetraspanin. (303 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVH7_BRAFL	C3Y8H3_BRAFL	C3XVH7	C3Y8H3	VPS9 domain-containing protein.	Uncharacterized protein.	0.478
C3XVH7_BRAFL	C3YA80_BRAFL	C3XVH7	C3YA80	VPS9 domain-containing protein.	Uncharacterized protein.	0.478
C3Y8H3_BRAFL	C3XVH7_BRAFL	C3Y8H3	C3XVH7	Uncharacterized protein.	VPS9 domain-containing protein.	0.478
C3Y8H3_BRAFL	C3YFN5_BRAFL	C3Y8H3	C3YFN5	Uncharacterized protein.	VPS9 domain-containing protein.	0.788
C3YA80_BRAFL	C3XVH7_BRAFL	C3YA80	C3XVH7	Uncharacterized protein.	VPS9 domain-containing protein.	0.478
C3YA80_BRAFL	C3YFN5_BRAFL	C3YA80	C3YFN5	Uncharacterized protein.	VPS9 domain-containing protein.	0.554
C3YDN0_BRAFL	C3YML7_BRAFL	C3YDN0	C3YML7	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.913
C3YDN0_BRAFL	C3ZXB4_BRAFL	C3YDN0	C3ZXB4	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.925
C3YDN0_BRAFL	C4A096_BRAFL	C3YDN0	C4A096	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	Uncharacterized protein.	0.925
C3YEZ7_BRAFL	C3ZT79_BRAFL	C3YEZ7	C3ZT79	Tetraspanin.	Tetraspanin.	0.904
C3YFN5_BRAFL	C3Y8H3_BRAFL	C3YFN5	C3Y8H3	VPS9 domain-containing protein.	Uncharacterized protein.	0.788
C3YFN5_BRAFL	C3YA80_BRAFL	C3YFN5	C3YA80	VPS9 domain-containing protein.	Uncharacterized protein.	0.554
C3YFN5_BRAFL	C3YIE0_BRAFL	C3YFN5	C3YIE0	VPS9 domain-containing protein.	Adaptin_N domain-containing protein.	0.515
C3YIE0_BRAFL	C3YFN5_BRAFL	C3YIE0	C3YFN5	Adaptin_N domain-containing protein.	VPS9 domain-containing protein.	0.515
C3YML7_BRAFL	C3YDN0_BRAFL	C3YML7	C3YDN0	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.913
C3YML7_BRAFL	C3ZXB4_BRAFL	C3YML7	C3ZXB4	Uncharacterized protein.	Uncharacterized protein.	0.756
C3YML7_BRAFL	C4A096_BRAFL	C3YML7	C4A096	Uncharacterized protein.	Uncharacterized protein.	0.756
C3ZT79_BRAFL	C3YEZ7_BRAFL	C3ZT79	C3YEZ7	Tetraspanin.	Tetraspanin.	0.904
C3ZXB4_BRAFL	C3YDN0_BRAFL	C3ZXB4	C3YDN0	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.925
C3ZXB4_BRAFL	C3YML7_BRAFL	C3ZXB4	C3YML7	Uncharacterized protein.	Uncharacterized protein.	0.756