(18 nodes) Transcytosis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZBD9_BRAFL	Uncharacterized protein. (286 aa)
	C3ZV37_BRAFL	Uncharacterized protein. (576 aa)
	C3ZXT6_BRAFL	Uncharacterized protein. (162 aa)
	C4A0B1_BRAFL	Uncharacterized protein. (269 aa)
	C4A0B2_BRAFL	Uncharacterized protein. (146 aa)
	C3Y1A7_BRAFL	Uncharacterized protein. (1044 aa)
	C3YD34_BRAFL	Uncharacterized protein. (386 aa)
	C3YDX8_BRAFL	Uncharacterized protein. (217 aa)
	C3YGH7_BRAFL	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (779 aa)
	C3YLR1_BRAFL	Uncharacterized protein. (188 aa)
	C3YP19_BRAFL	Uso1_p115_head domain-containing protein. (618 aa)
	C3Z1G5_BRAFL	Uncharacterized protein. (897 aa)
	C3Z1G7_BRAFL	Uncharacterized protein. (335 aa)
	C3Z5M6_BRAFL	Alpha-2-MRAP_C domain-containing protein. (133 aa)
	C3Z6M5_BRAFL	Uncharacterized protein. (410 aa)
	C3Z901_BRAFL	Uncharacterized protein. (295 aa)
	C3Z9A8_BRAFL	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1533 aa)
	C3ZI74_BRAFL	Uncharacterized protein. (405 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YD34_BRAFL	C3ZI74_BRAFL	C3YD34	C3ZI74	Uncharacterized protein.	Uncharacterized protein.	0.485
C3YD34_BRAFL	C4A0B2_BRAFL	C3YD34	C4A0B2	Uncharacterized protein.	Uncharacterized protein.	0.492
C3YGH7_BRAFL	C3Z9A8_BRAFL	C3YGH7	C3Z9A8	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.519
C3Z9A8_BRAFL	C3YGH7_BRAFL	C3Z9A8	C3YGH7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.519
C3ZI74_BRAFL	C3YD34_BRAFL	C3ZI74	C3YD34	Uncharacterized protein.	Uncharacterized protein.	0.485
C3ZI74_BRAFL	C4A0B1_BRAFL	C3ZI74	C4A0B1	Uncharacterized protein.	Uncharacterized protein.	0.501
C4A0B1_BRAFL	C3ZI74_BRAFL	C4A0B1	C3ZI74	Uncharacterized protein.	Uncharacterized protein.	0.501
C4A0B1_BRAFL	C4A0B2_BRAFL	C4A0B1	C4A0B2	Uncharacterized protein.	Uncharacterized protein.	0.950
C4A0B2_BRAFL	C3YD34_BRAFL	C4A0B2	C3YD34	Uncharacterized protein.	Uncharacterized protein.	0.492
C4A0B2_BRAFL	C4A0B1_BRAFL	C4A0B2	C4A0B1	Uncharacterized protein.	Uncharacterized protein.	0.950