(37 nodes) Maintenance of protein location network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C4A0W9_BRAFL	Uncharacterized protein. (179 aa)
	C3XPR1_BRAFL	Chorein_N domain-containing protein. (153 aa)
	C3XPR2_BRAFL	UBA domain-containing protein. (4212 aa)
	C3XPY9_BRAFL	Protein kinase domain-containing protein. (347 aa)
	C3XRU7_BRAFL	Uncharacterized protein. (2383 aa)
	C3XVY7_BRAFL	CW-type domain-containing protein. (465 aa)
	C3XYI8_BRAFL	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (191 aa)
	C3Y1W9_BRAFL	BZIP domain-containing protein. (423 aa)
	C3Y4F4_BRAFL	Uncharacterized protein. (676 aa)
	C3Y6T6_BRAFL	Uncharacterized protein. (500 aa)
	C3Y953_BRAFL	SUN domain-containing protein. (1111 aa)
	C3Y9L4_BRAFL	Uncharacterized protein. (2990 aa)
	C3YCV9_BRAFL	Uncharacterized protein. (230 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YJD5_BRAFL	ER lumen protein-retaining receptor. (212 aa)
	C3YKE2_BRAFL	Uncharacterized protein. (3136 aa)
	C3YLI3_BRAFL	PHD-type domain-containing protein. (1052 aa)
	C3YSZ2_BRAFL	Uncharacterized protein. (263 aa)
	C3YSZ6_BRAFL	Uncharacterized protein. (535 aa)
	C3YTH8_BRAFL	ANK_REP_REGION domain-containing protein. (429 aa)
	RAB9A.1	Uncharacterized protein. (192 aa)
	C3YXR6_BRAFL	Profilin; Belongs to the profilin family. (205 aa)
	C3Z2D6_BRAFL	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	C3Y6B5_BRAFL	Uncharacterized protein. (1548 aa)
	C3Z4Y9_BRAFL	Matrin-type domain-containing protein. (1137 aa)
	C3Z792_BRAFL	Uncharacterized protein. (4526 aa)
	C3ZAE7_BRAFL	Uncharacterized protein. (328 aa)
	C3ZIN8_BRAFL	Suppressor of fused protein-like protein. (375 aa)
	C3ZJL6_BRAFL	Uncharacterized protein. (840 aa)
	C3ZNT3_BRAFL	PDZ domain-containing protein. (660 aa)
	C3ZQ44_BRAFL	Uncharacterized protein. (144 aa)
	C3ZQ45_BRAFL	Uncharacterized protein. (160 aa)
	C3ZR37_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (306 aa)
	C3ZRP4_BRAFL	BTP domain-containing protein. (281 aa)
	C3ZTC4_BRAFL	Uncharacterized protein. (373 aa)
	C3ZTF9_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XYI8_BRAFL	C3YJD5_BRAFL	C3XYI8	C3YJD5	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	ER lumen protein-retaining receptor.	0.687
C3YJD5_BRAFL	C3XYI8_BRAFL	C3YJD5	C3XYI8	ER lumen protein-retaining receptor.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.687
C3YJD5_BRAFL	C3ZTC4_BRAFL	C3YJD5	C3ZTC4	ER lumen protein-retaining receptor.	Uncharacterized protein.	0.501
C3YJD5_BRAFL	C3ZTF9_BRAFL	C3YJD5	C3ZTF9	ER lumen protein-retaining receptor.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.463
C3ZTC4_BRAFL	C3YJD5_BRAFL	C3ZTC4	C3YJD5	Uncharacterized protein.	ER lumen protein-retaining receptor.	0.501
C3ZTF9_BRAFL	C3YJD5_BRAFL	C3ZTF9	C3YJD5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	ER lumen protein-retaining receptor.	0.463